RNA id: TU1348582


Basic Information

Item Value
RNA id TU1348582
length 561
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1182540
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48944407 ~ 48944967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGTTCCAGGGCttttaattatgttttttttctcccagcAGCTCTCTCCATGGCAACCCAAAGTTCTGCTTGTCACAACATGAAACATGAGGGAATAAAGACATTTTCCCAATATGCTGCTACACCAGTGAGCATATTTCTCCTTGAGACAGGCCTGCTGTATGCTGCCAATCTGATCCTTTAGCCCCCTCTTTTGGCTGCCTGGTGAACTGCAGATGAGTCTGCATGGGTGCATGTGCATCTTCCTACCTTGGTGTGTGTAGGATATTAAGTGTAGTTGAATTTCATttgaacgagacagagagagagaaacggagagctGGAGAGAAGGAGGATCCACACAAACAGAAGAGATCATCAGGGATCGGATCAAATCACTCTTCTAAGCAAAATGATATAATCATATGACACCGGAGGTAAAGCCACTGTAAACTGACTCTCTCCATTGACTGTCTTCGTGGTGACTGCTGTGAGTGGCAGGAGATGTGATGTATGACTGTTTCATAGTAAATACAGAGGACAGAGACTATGTACTGAGAGTGGTTGGCCACATGTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348512 lncRNA upstream 65162 48875674 ~ 48879245 (+) False G1182492
TU1348515 lncRNA upstream 65162 48875674 ~ 48879245 (+) False G1182492
TU1348516 lncRNA upstream 65162 48875674 ~ 48879245 (+) False G1182492
TU1348517 lncRNA upstream 65162 48875674 ~ 48879245 (+) False G1182492
TU1348518 lncRNA upstream 65162 48875674 ~ 48879245 (+) False G1182492
TU1348584 lncRNA downstream 4921 48949888 ~ 48956559 (+) True G1182542
TU1348590 lncRNA downstream 12828 48957795 ~ 48959202 (+) False G1182547
TU1348591 lncRNA downstream 12828 48957795 ~ 48959202 (+) False G1182547
TU1348592 lncRNA downstream 12828 48957795 ~ 48959202 (+) False G1182547
TU1348593 lncRNA downstream 12828 48957795 ~ 48959202 (+) True G1182547
XM_036941356.1 mRNA upstream 148379 48762605 ~ 48796028 (+) False LOC110486653
XM_036941357.1 mRNA upstream 148379 48762605 ~ 48796028 (+) False LOC110486653
XM_036941358.1 mRNA upstream 148379 48762606 ~ 48796028 (+) False LOC110486653
XM_036941360.1 mRNA upstream 148379 48762606 ~ 48796028 (+) True LOC110486653
XM_036941373.1 mRNA upstream 150920 48762602 ~ 48793487 (+) False LOC110486653
XR_005035576.1 mRNA downstream 12810 48957777 ~ 48959202 (+) True LOC110486658
XR_005035844.1 mRNA downstream 13222 48958189 ~ 48958276 (+) True LOC118938637
XR_005035843.1 mRNA downstream 13455 48958422 ~ 48958510 (+) True LOC118938636
XR_005035842.1 mRNA downstream 13711 48958678 ~ 48958765 (+) True LOC118938635
XM_021558431.2 mRNA downstream 155040 49100007 ~ 49104036 (+) True LOC110486662
TU1348348 other upstream 382783 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 821832 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1201343 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1394859 47549279 ~ 47549548 (+) True G1181636
TU1347459 other upstream 1474395 47468201 ~ 47470012 (+) True tmem100a
TU1348583 other downstream 1782 48946749 ~ 48947969 (+) True G1182541
TU1348602 other downstream 33033 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 118818 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 170008 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 256019 49200986 ~ 49202690 (+) True LOC110486671

Expression Profile