RNA id: TU1348601


Basic Information

Item Value
RNA id TU1348601
length 385
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1182554
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48977516 ~ 48977900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAACGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAACGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGGGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348596 lncRNA upstream 4445 48971874 ~ 48973071 (+) True G1182550
TU1348590 lncRNA upstream 18314 48957795 ~ 48959202 (+) False G1182547
TU1348591 lncRNA upstream 18314 48957795 ~ 48959202 (+) False G1182547
TU1348592 lncRNA upstream 18314 48957795 ~ 48959202 (+) False G1182547
TU1348593 lncRNA upstream 18314 48957795 ~ 48959202 (+) True G1182547
TU1348603 lncRNA downstream 3654 48981554 ~ 48982061 (+) True G1182556
TU1348604 lncRNA downstream 7274 48985174 ~ 48985475 (+) True G1182557
TU1348607 lncRNA downstream 11769 48989669 ~ 48989912 (+) True G1182560
TU1348609 lncRNA downstream 16533 48994433 ~ 48994681 (+) True G1182562
TU1348625 lncRNA downstream 43850 49021750 ~ 49021956 (+) True G1182578
XR_005035576.1 mRNA upstream 18314 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 18751 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 19006 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 19240 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 181488 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 122107 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 157051 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 220946 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 223043 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 232565 49210465 ~ 49213419 (+) True LOC110486670
TU1348583 other upstream 29547 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 415892 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 854941 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1234452 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1427968 47549279 ~ 47549548 (+) True G1181636
TU1348602 other downstream 100 48978000 ~ 48981403 (+) True G1182555
TU1348645 other downstream 85885 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 137075 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 223086 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 285750 49263650 ~ 49266771 (+) True LOC110486678

Expression Profile