RNA id: TU1348602


Basic Information

Item Value
RNA id TU1348602
length 3404
RNA type TUCP
GC content 0.51
exon number 1
gene id G1182555
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48978000 ~ 48981403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGTAGTGGAGCGTGAGTAGACCACAGGGTTCTACAGACGGGTTTAGAGAGGGGTTCAGACAGACACTTGTGACTGTGTGAGGTTGTGTATTGTGGGGGCCACGTTTTTAGAGGTGGTAGGAAAGTGTTCTGTTAAAATGTCTTAAATGTTAGCTGAATGATGTTAGGGTCATTTCATTTCAGACACGCCAAATCATTCAGTTTAGAAAACAACAGTGTGTAATAAGAAAGATAGCATACTGTCATTAGCCTTGAAATCGATGCTTAGGCTACCGCGTTAGAAGTGAAACGTGCTGTTAAAACTACGCTGAACAACTCAGGTAAGTGTGTGATATCATCTCCCTGTTGATGCTGGTGCTATCGTGCAGCGTGACCTCCAGGTGAACTGGGACACTGCACCAAACATAGAGGTGAGACAGTTTAATGGGCATTGTCAGGGGTAGCTATATTCATTCATGGCATTAGAATAAGCATATGGCTCAGACTGATATGACTCCCTCACACATTCTGCTCCTGAAACCTTTAGGGAATGTGCATATGGAATGAGGAGCAGAAGTTGATGCATAAACAACAGTTGCAGGACAGACTTTTGTATGAAAAGACATGTTTGTTTATGAAGATGAAATGAaacaaatatatctactgtatggtTCTACATTAAATATGGAGAGTAGAGTTGCATTCTCACCCTGGACAGGGGCCATGTATGTGTGGGGttatacagtagatatactgcTATTACAGCATTAAGGTGTGTGTAGTAGTGGGACGAGGGGTAGCAACATTAGTGTAGTGTAGGTTTGGGATGTTCCATACTATAGGGGTAGTGATCATTGGTTTACAGGTGGGGGGagatcagggcagggcagggggAGTCTGTGGGGCGGCTGCTCATGCTGtgtgtcaatcagtcagtcaggggtttggatgaggtgatgAGGGGTTAGTCAGGGGTTTGGACCACAGAGAGGGGTGATGGGGGGATAGTCAGGGGTTTGGACCACAGAGAGGGGTGATGGGGGGATAGTCAGGGGTTTGGACCAcagagaggggtgatgaggggtTAGTCAGGGGTTTGGACCAcagagaggggtgatgaggggATAGTCAGGGGTTTGGACCAcagagaggggtgatgaggggATAGTCAGGGGTTTGGACCACAGAGAGGGGTGATGGGGGGATAGTAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTTTGGACCAcagagaggggtgatgaggggATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTCTGGACCACAGAGAGGGGTGTTGGGGGAATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGATAGTCAGGGGGTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTTTGGACCACAGAGAGGGGTGTTGGGGGGATAGTCAGGGGTACAGTAAGCTAGTAGTTACCCAACCATCTGGATCTTATCCTGGCTCTGGACTAGAGGAGATAATAAGCCGTGTGTATTGAGGACAGGAGTAATGTCCCAGCAGACTGGCTTGTAAGGGAGAGTGACATGTGGGAGTCTATTGGAATGAGCTGGAATCTGACCTAGGATCAGATAGGAAATACTAAGAGGCTCCCGCTTGCCTCTCATATTATCTGCTCCCATAAATCATCATCATGGGCGAAGTGAGCATGCTCAGTAGAGACCGCAGCAGCATCTACAGTAGTCTCCCTCAGAGTGACACCCACCCCTGCAGTGTTACCCTGGCAACAACACACTCAGCCAGTGTAGGTGTGTTTGTGGAGACGTGGGACTGGTCTGGGGGTGCTAGGGTTATAGGGCTGGGGGGTGCAGGGGTAAAAGGGGGCGCAGTGAAAAGGATCAGGGGTGGGTGGGGTCATTGTTTGAGGGGTTACCTGTAGTGGGGGTGCTGGAAGTGACAGTGTGGAACCTCTGAAAGAACAGTGAAATGCATTGAGACTCTCATCCATGTTGGTACCCTAACAATGCTGTCACCATTAAGGTTCTGACACCTTTCCCTGGACACTcagacagtacatgacagtgtcACTTCTCTGCCTCTCTTACTTCCCCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTGTTCTTCCCTCTGTCCATCACAGCCCACCTCTCTGTGACTTTGTATCCCCTTTCCTTTCCcaatgggcacacactggttgaaacaacgcttttcccacatcatttcaatgataTTACggtgaaccaacgtggaatagacgtctGTGGGTTCTTTCTTTTTTAGGCCTCTCTCGCTTTTTTCACTTCATGCATCTTAagctctacccatccctcctgtCTTTCACCTTCTCTTCTCATCATTTCTCTATCTCCAGACGTACATCTCCCTCTGCTATACATTCCTTTGTATTCCTTCTAGATGCTCTTTCCCTCTCCGTATGTtcctggtctccctcctcctctgtcctcgtCTTTCCTGTCTCTACCCAGAACCCAACCCGCATCCCCCATGTCTTACCCATCTCCTCCAGTTCTGAGGTCATGGATTTGGAGCGGAGAGCGATGGCCGGAGTGCTTAGTCTTTTACTCTGCTGGGGGACTGTGGAGAAAGGAAAGCATTATCATCCTcgtcctcatcctcatcctcatcctcctcacatCATCGTTGTCGTAGTTCCAGACCCTGTGTTGTCTCTTACTTTTCTTTCTCTGGCCATCCTCCATGTCAGGGTTGCGTGTCACCATGACAACCTTGACCATGAGGGCGTTTCCACCTTGCCTGATCATGTTGACCACCTGCCTGTGTCCCACCTTCACCACATTCTGACCATTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348601 lncRNA upstream 100 48977516 ~ 48977900 (+) True G1182554
TU1348596 lncRNA upstream 4929 48971874 ~ 48973071 (+) True G1182550
TU1348590 lncRNA upstream 18798 48957795 ~ 48959202 (+) False G1182547
TU1348591 lncRNA upstream 18798 48957795 ~ 48959202 (+) False G1182547
TU1348592 lncRNA upstream 18798 48957795 ~ 48959202 (+) False G1182547
TU1348603 lncRNA downstream 151 48981554 ~ 48982061 (+) True G1182556
TU1348604 lncRNA downstream 3771 48985174 ~ 48985475 (+) True G1182557
TU1348607 lncRNA downstream 8266 48989669 ~ 48989912 (+) True G1182560
TU1348609 lncRNA downstream 13030 48994433 ~ 48994681 (+) True G1182562
TU1348625 lncRNA downstream 40347 49021750 ~ 49021956 (+) True G1182578
XR_005035576.1 mRNA upstream 18798 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 19235 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 19490 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 19724 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 181972 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 118604 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 153548 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 217443 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 219540 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 229062 49210465 ~ 49213419 (+) True LOC110486670
TU1348583 other upstream 30031 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 416376 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 855425 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1234936 47742361 ~ 47743064 (+) True G1181955
TU1347506 other upstream 1428452 47549279 ~ 47549548 (+) True G1181636
TU1348645 other downstream 82382 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 133572 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 219583 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 282247 49263650 ~ 49266771 (+) True LOC110486678
TU1348751 other downstream 300256 49281659 ~ 49283503 (+) True LOC110486677

Expression Profile