RNA id: TU1348627


Basic Information

Item Value
RNA id TU1348627
length 212
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1182580
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49025890 ~ 49026101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaatactgcgaCAGCACAgccctggtcattctttaaaagtaacttcctcaccattttagataagcatgctccgttcaaaaaatgcagaactaagaacagatacagcccttggttcaccccagacctgactgccctcgaccagcacaaaaacatcctgtggcggactgcaatagcatcgaatagtccccgtgatatgcaactgttcaggga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348625 lncRNA upstream 3934 49021750 ~ 49021956 (+) True G1182578
TU1348609 lncRNA upstream 31209 48994433 ~ 48994681 (+) True G1182562
TU1348607 lncRNA upstream 35978 48989669 ~ 48989912 (+) True G1182560
TU1348604 lncRNA upstream 40415 48985174 ~ 48985475 (+) True G1182557
TU1348603 lncRNA upstream 43829 48981554 ~ 48982061 (+) True G1182556
TU1348628 lncRNA downstream 735 49026836 ~ 49027183 (+) True G1182581
TU1348629 lncRNA downstream 1858 49027959 ~ 49028241 (+) True G1182582
TU1348630 lncRNA downstream 2714 49028815 ~ 49029085 (+) True G1182583
TU1348631 lncRNA downstream 3664 49029765 ~ 49032221 (+) True G1182584
TU1348632 lncRNA downstream 7007 49033108 ~ 49033385 (+) True G1182585
XR_005035576.1 mRNA upstream 66688 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 67125 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 67380 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 67614 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 229862 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 73906 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 108850 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 172745 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 174842 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 184364 49210465 ~ 49213419 (+) True LOC110486670
TU1348602 other upstream 44487 48978000 ~ 48981403 (+) True G1182555
TU1348583 other upstream 77921 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 464266 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 903315 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1282826 47742361 ~ 47743064 (+) True G1181955
TU1348645 other downstream 37684 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 88874 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 174885 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 237549 49263650 ~ 49266771 (+) True LOC110486678
TU1348751 other downstream 255558 49281659 ~ 49283503 (+) True LOC110486677

Expression Profile