RNA id: TCONS_00042838


Basic Information

Item Value
RNA id TCONS_00042838
length 4079
RNA type mRNA
GC content 0.37
exon number 4
gene id XLOC_021580
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17509794 ~ 17550653 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACTTCATGATGAGTTATGCTGAAAAGCCAGAGGACATAACACGAGACGAGTGGATGGaaaagctcaataatgttcacatTCAGCGGGCAGACATGAATCGACTCATCATGAATTATCTTGTGACAGAGGGGTTTAAAGAGGCAGCCGAGAAGTTCAGGATGGAATCGGGCATTGAGCCTAGTGTTGATCTGGACTCTTTGGATGAAAGGATAAAAATAAGGGAGATGGTCCTGAAGGGACAAATTCAAGAGGCCATTGCACTGATCAACAGTCTGCATCCTGAGCTGCTGGACACTAATCGCTACCTGTACTTTCATCTTCAGCAACAACACCTGATCGAGTTGATCCGTCTGCGGGAAACGGAGGCTGCACTGGAGTTTGCACAGACGCAGCTGGCTGAACAGGGAGAGGAGAGCCGGGAGTGTCTGACTGAGATGGAGCGCACACTCGCCCTCCTGGCCTTCGATAACCCAGAAGAGTCGCCCTTTGGGGATCTGCTTAACATGATGCAGAGACAGAAGGTGTGGAGTGAGGTCAACCAGGCGGTGCTGGACTACGAAAACAGAGAGTCGACACCCAAATTGGCCAAACTCCTCAAACTGCTGCTGTGGGCTCAGAACGAGTTGGACCAGAAGAAAGTCAAGTACCCCAAAATGACAGACCTTAGCAAAGGTACCATCGAGGACCCCAAGTGAATAAACAAACACCCGGCATCTCTATGCTTGCATTCTGCGGGGGAACAAAACAGACTCTTTCCCTTTCCTTAACTATTTATACACAGTGACTGACACTCAAAACATCCTTTTATCAACATTTTGTTTCGTTTACTTGTCGCTTATCAGAGACTTTGCATTAAATGGGCTGCGGAAATGAGATTTAAGGATGACTTCTAGCCAAAATGGAAACCCTTTTTAATCGCAGGAGGAGTTCTGTGATTTTTGTTACCACAATGTTTGACTTGCTGAGCTGAATTGATTGCATTttagcctctttttttttttttttgcagagaatGATTATCTATTTTGGGTCGGTGAATGTTCAGAAAGTCTACAACTCTAGCTGAGGACTGAACCACACTATTTAGATTTAGCTGAGAGTGTCCACTGAAGTGAGGTACCCAAGGCACAGTAGTGGTGTCATCAAGGACGGTGGACTGATTGTACTGATACAGAGAAAGCCAGTTCTGTGTGCTTTCACAACTTTTATTTGCAGTGCACAAGTATACATTTTGTATGCGTGTTAAAGGGCCCCGTCAAAGAAAAGCTGCCCTTTTTGTTTGAGTACTAATGTTATTGCATTATAATGTTATAAAGTCACGTGACATTGTTTTCTACTGTATATTGTCATAGTATTCCTGCTTACATTGACATTCAATTGTGATTTATAGATATTGCAGAGATCAAATTGTAAGCTTCTGAGGTCAGACGCTTTACATGGGTATTAAATAAtcgtttcttttttaaatccccAAACTCTTTGACTTTGAAAAGTGCTGCTGTTGTCGAATGCTATGGCCAAATACTTCTGCTGTGATGCTCAATTCAATGTTGCAGAGGGGTGTTTTTATTTTGGCACATTAATATGGTAAATAAAAGCCACCCAGTTCCTGTTTATGATAAATGTTTTCGGTTGGCTAACCTTGGACTTTGCCTtgttaaatttgatttatttagctaTGTTACATTGTCCAGGTAAAGTATCATGTAATATAGAAATATTTAATTGATGAAAGCAATTCCACATGTCAGATCTTTGCAATGAATCAGAAGAGTCGATTCACAAAGCAAGTCCAAAAGAGTCACTCTGTGTTCGTCAGACTGAATTGGTCTttgcagttttaatttaattggctaattgaaatgaaaattctgataTCATCTGTTATTAAGGGTTGTTCTTAAATTTGAgcctttttaaatataaagaaagTTATATTTATCATCTAAATAATGTTTATATGAGCTGACACATAAAAGCAGCAACCAGAATACAGAAATATACACGTTTGGTAATAGAAAACTGCATCAAACCTTATTAGAGCAAACCTTTGCATGCAACAGACGGCCAAATATGATCACAATTTGTGAGTGAGCCACATTTTAACATGTAAATAAGATGTAGTGTATcctgtaaaaatgtaaaagttaaacactgcaaaaaatctgtttcttacttagatttttattaCTTACTTTCTAGTTCAAAggtctaaaaattcttaaatcgagaagcattttctagacaagcaaaacatattgtcttgttttaaaaataatatgccataaattaagtgagtttttacttaaaacaagcacaataatcggccaatggggtaagcaaaataaacttAAGCCAGAAggaaaaactagattattttgcttaccctattggtagattattgtgtttgttttaagtaaaaactctATTAGTTTTGATATATCATTCCTTAAAACAAGACACAATGTTaattacttgtctagaaaatgttgctTGATTTaagacaagacaaaaactctaagtaataaaagcattttttgcagcatATAGGAGTCCAATAATATTGGGaaagtattttgtttgttttgacctTCATTATATTTCAATACAAACTATAGTACTATATATGTACAAATAGGTTTTTCTAATTAAGCTCTTATTAATTAtcgtttattttacatttatttcatgttattaagttgttgattttttttgcaCTAAATTTAACattatatgtgtttttttgtttattgtgtgcATTAAGTTTGCTCAAAATGTTTGATTACTTCAAATTTAATGCTTTTCTCCAGTCATTtcctaacactttattttattttattttatgtattttttttgtattaatgctTAAAGAACAAAGTACAGaacaattaaaatacaaaaatggaAAAAGGGCTCAGGGGTGTgcaaaaaacaaaagacaaacaaatatttgtgtaaataaacatacCGAAAAATGATAAGGGCCTTGTGGGATTGCTGGATCTTGAAGGTTTCAAGTAAAAAACGGTTTAAAGTAAAAGGTTTCAAGTAAAAAACGGGTTAAATTAGTGCTTGGATTTACGTTGTTGGTATAATGTTTGAATTTCTTTAGTGTTGCAGGATGAAATGGTTTTTGGTTATTGCAAGTTTCATCTGTGAATATGGTACTTGGTGAATATTACCTAAAGATTAACAAGCTTCTCTTTTTTTCGTTACAGTTAAAAAATCCAATAATAATGCACTTTTTGGTTTTATATGCCACACTAAGATAAGTCATTACGCAATTTGACgtaatacatttttgcatttttgtgagCAGACTTATTTTAAACGAGTGTTCAAAAGAACCGATTCGGGCTAACGAGTCAGTACCACATTAATCTAATGAATTTGCCTCTCATCAGTcgtttaattatgtttaataactAAACGTATCCGCTCACATTCCGCATGAAAAACAAATCGCATATTACGTTCAGAGATATTTATCCAGACGAAATTCTGTCTGACAGTGTTGTTGTGAGCGAGTGAAAGGGGCTGAGTCACGTTACTTCCTGGTTTGAGGCGCCAGTGGTTGGAGGAACTGCGTGGCTGAAAAAAGAAACTGACACGTGGATGATCATCAACACTTTAGGAATCAGGAAAAGGCTGATTTTCTCCTCGCTGCAGTTGCGAAAGCCGAAAGCCTGCTCGTGTGTGGCCGTCGCCGGAGCGCTATGGATGCGGCAGAGCAGCTGTGAGGAGATGCTTCCGCCAACAAACTCCGACAGAAACATCTTTTTTTCATTGCTTTGCTTTTTTGCCTGTCACGCTCGCACAGACTGACCCGAGAGGACACACACGCTGAGGGACGCGGGGAAGGATATATATATGTCGTTGAATGGCAGTTCTACAAAAACATGGAAAGAACTCTTGTCCAGATTTGTCCAGTATTAAGGAAAACCCCGCAGATAATATCGGAGCAGCCGGATCACAGAAGAAGTGGACAGAGTCAAGTCAGAACTGGACAAGGTGAGACCACCTCACCAAACTTTCATCCAAATAATGCACATAATTAAGTAGTTTATTATGATTAT

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030515-4 Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within determination of dorsal identity. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including endoderm; hatching gland; mesoderm; notochord; and tail bud. Orthologous to human GID8 (GID complex subunit 8 homolog).

Ensembl:

ensembl_id ENSDART00000054738

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044806 lncRNA upstream 34589 17473119 ~ 17477448 (+) True XLOC_021578
TCONS_00044805 lncRNA upstream 90601 17412525 ~ 17421436 (+) False XLOC_021576
TCONS_00044668 lncRNA upstream 257280 17254498 ~ 17254757 (+) True XLOC_021573
TCONS_00044804 lncRNA upstream 300763 17146315 ~ 17211274 (+) False XLOC_021571
TCONS_00042817 lncRNA upstream 613453 16889403 ~ 16898584 (+) False XLOC_021567
TCONS_00042840 lncRNA downstream 19335 17542719 ~ 17546078 (+) False XLOC_021580
TCONS_00044807 lncRNA downstream 23728 17547112 ~ 17550653 (+) True XLOC_021580
TCONS_00042841 lncRNA downstream 133452 17656836 ~ 17659102 (+) True XLOC_021581
TCONS_00044808 lncRNA downstream 247040 17770424 ~ 17776345 (+) True XLOC_021582
TCONS_00042842 lncRNA downstream 259124 17782508 ~ 17783044 (+) True XLOC_021583
TCONS_00042835 mRNA upstream 46805 17437554 ~ 17465232 (+) True XLOC_021577
TCONS_00042834 mRNA upstream 64874 17417539 ~ 17447163 (+) True XLOC_021576
TCONS_00042833 mRNA upstream 108026 17387325 ~ 17404011 (+) True XLOC_021575
TCONS_00042831 mRNA upstream 126788 17354154 ~ 17385249 (+) False XLOC_021574
TCONS_00042844 mRNA downstream 277333 17800717 ~ 17815253 (+) False XLOC_021585
TCONS_00042845 mRNA downstream 277455 17800839 ~ 17814778 (+) True XLOC_021585
TCONS_00042846 mRNA downstream 315803 17839187 ~ 17848907 (+) False XLOC_021586
TCONS_00042849 mRNA downstream 342170 17865554 ~ 17876777 (+) False XLOC_021587
TCONS_00042848 mRNA downstream 342170 17865554 ~ 17876777 (+) False XLOC_021587
TCONS_00042836 other upstream 10609 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042829 other upstream 300231 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042828 other upstream 300763 17146561 ~ 17211274 (+) False XLOC_021571
TCONS_00042827 other upstream 365046 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042824 other upstream 566596 16937629 ~ 16945441 (+) True XLOC_021568
TCONS_00042843 other downstream 260029 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042853 other downstream 350142 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042854 other downstream 350688 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042869 other downstream 765690 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042875 other downstream 1164973 18688357 ~ 18691482 (+) False XLOC_021600

Expression Profile

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