RNA id: TU1348628


Basic Information

Item Value
RNA id TU1348628
length 348
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1182581
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49026836 ~ 49027183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagtactgtgcagccgtcttcatcgaccttgccaaggctttcgactcggtcaatcaccatattcttatcggcagactcagtagcctcggtttttcggatgactgccttgcctggttcaccaattactttgcagacagagttcagtgtgtcaaatcggagggcatgctgtccggtcctctggcagtctctatgggggtgccacagggttcaattctcgggccgactcttttctctgtatacatcaatgatgttgctcttgctgcgggcgattccctgatccacctctacgcagacgacaccattctatatactttcggcccgtcattggacactgtgctatctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348627 lncRNA upstream 735 49025890 ~ 49026101 (+) True G1182580
TU1348625 lncRNA upstream 4880 49021750 ~ 49021956 (+) True G1182578
TU1348609 lncRNA upstream 32155 48994433 ~ 48994681 (+) True G1182562
TU1348607 lncRNA upstream 36924 48989669 ~ 48989912 (+) True G1182560
TU1348604 lncRNA upstream 41361 48985174 ~ 48985475 (+) True G1182557
TU1348629 lncRNA downstream 776 49027959 ~ 49028241 (+) True G1182582
TU1348630 lncRNA downstream 1632 49028815 ~ 49029085 (+) True G1182583
TU1348631 lncRNA downstream 2582 49029765 ~ 49032221 (+) True G1182584
TU1348632 lncRNA downstream 5925 49033108 ~ 49033385 (+) True G1182585
TU1348634 lncRNA downstream 17299 49044482 ~ 49044777 (+) True G1182587
XR_005035576.1 mRNA upstream 67634 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 68071 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 68326 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 68560 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 230808 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 72824 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 107768 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 171663 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 173760 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 183282 49210465 ~ 49213419 (+) True LOC110486670
TU1348602 other upstream 45433 48978000 ~ 48981403 (+) True G1182555
TU1348583 other upstream 78867 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 465212 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 904261 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1283772 47742361 ~ 47743064 (+) True G1181955
TU1348645 other downstream 36602 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 87792 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 173803 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 236467 49263650 ~ 49266771 (+) True LOC110486678
TU1348751 other downstream 254476 49281659 ~ 49283503 (+) True LOC110486677

Expression Profile