RNA id: TU1348631


Basic Information

Item Value
RNA id TU1348631
length 240
lncRNA type intronic
GC content 0.49
exon number 3
gene id G1182584
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49029765 ~ 49032221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTATAAacactgccacagcacagcccctccactgttactacaaacactgccacagcacagcccctccactgttactataaatactgccacagcacagcccctccactgttactataaatactaccACAGCACCCTCCAATGTTACTacaaatactgccacagcacagcccctccactgttactataaacactgccacagcacagcccctccactgttactataaacaCTGCCACAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348630 lncRNA upstream 680 49028815 ~ 49029085 (+) True G1182583
TU1348629 lncRNA upstream 1524 49027959 ~ 49028241 (+) True G1182582
TU1348628 lncRNA upstream 2582 49026836 ~ 49027183 (+) True G1182581
TU1348627 lncRNA upstream 3664 49025890 ~ 49026101 (+) True G1182580
TU1348625 lncRNA upstream 7809 49021750 ~ 49021956 (+) True G1182578
TU1348632 lncRNA downstream 887 49033108 ~ 49033385 (+) True G1182585
TU1348634 lncRNA downstream 12261 49044482 ~ 49044777 (+) True G1182587
TU1348635 lncRNA downstream 12855 49045076 ~ 49046685 (+) True G1182588
TU1348638 lncRNA downstream 21375 49053596 ~ 49054017 (+) True G1182591
TU1348679 lncRNA downstream 71881 49104102 ~ 49148293 (+) False G1182627
XR_005035576.1 mRNA upstream 70563 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 71000 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 71255 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 71489 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 233737 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 67786 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 102730 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 166625 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 168722 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 178244 49210465 ~ 49213419 (+) True LOC110486670
TU1348602 other upstream 48362 48978000 ~ 48981403 (+) True G1182555
TU1348583 other upstream 81796 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 468141 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 907190 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1286701 47742361 ~ 47743064 (+) True G1181955
TU1348645 other downstream 31564 49063785 ~ 49065142 (+) True G1182595
TU1348688 other downstream 82754 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 168765 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 231429 49263650 ~ 49266771 (+) True LOC110486678
TU1348751 other downstream 249438 49281659 ~ 49283503 (+) True LOC110486677

Expression Profile