RNA id: TU1348645


Basic Information

Item Value
RNA id TU1348645
length 1310
RNA type TUCP
GC content 0.44
exon number 2
gene id G1182595
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49063785 ~ 49065142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatgattctatgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatgcccacgtgtacaaagcgaggtccatacagaaatggtttgtcgagatcagtgtggaagaacttaactggcctgcacagagccctgacctcaactccatcaaacacctatgggatgaattgaaacgccaacatcagtgtccgacctcactaatgctcatggctgaacggaagcaagtccccgcagcaatgttccatcgtCTAGTGGAAAGtgttcccagaagagtgggggctgtcatagcagcaaaagggggaccaactccatattaatgcacatgattttggaatgagatgtttgacgagcaggtgtccacatacttatggtcatgtagtgtatatttaaGAGTTGAGTGGAATTGTGACGTACAGAAGAATAGGAGGAAGAGTGGGTGAGGCGTTATAGAATCATTGAAAAAGGTACATCACTGTTGTTAAAGATGGCCAGTTTGAGTTCCCTGAGCCAGTAAAGGAATCCTTCACAGTGTGTGGCTATTTTACACATATATGCACTAGGCTGTGTGTAGGTGAAGCTGATGGTGCATGGTGTGGATTAGTACCATTTACTAGCATTGATATCACTCATTTAATGTACATGTAGGTGTCAGCAGGTGTTAGCATTGATATCACTGATTTGATGTACATGTAGGTGTCAGCAGGTACTAGCATTGATATCACTGATTTGATGTACATGTAGGTGTCAGCAGGTACTAGCATTGATATCACTGATTTGATGTACATGTAGGTGTCAGCAGGTGTTAGCATTGATATCACTGATTTGATGTACATGTAGGTGTCAGCAGGTGTTAGCATTGATGCTAAGGGCTGTAGGATCATTCAGTGGTTGGTGAAACACCTCAAAGGATCCAGTCTCTTAGCACACTCAGAtcgcctctctgtctctccctctctgctgcctgcttctctgctctgctTGTCCTCATTATGGAAAAGCTGTTCCACTTGGCATCACATTTAACCCCTCACTTTCCACTGAGACAAGCAAAGTGGGTCACAAGATCTGAAGCACTAAACATACCAATGGGAAGTACATGCTGCTAGAAACAAGACTGAAAACTGAGTGATGGAGAAGACGGGAAACCGACAGGAGGAGGCTTAGTGACAAGACGTAAATGACAGTCATATCCTGtatggatagagagaaagacattaCAGACTGGAGAGGGACACACATCCAGTCAAGAAAGGAATATGAAAGCTTGTGTAAATATGTTGAGTAAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348638 lncRNA upstream 9768 49053596 ~ 49054017 (+) True G1182591
TU1348635 lncRNA upstream 17100 49045076 ~ 49046685 (+) True G1182588
TU1348634 lncRNA upstream 19008 49044482 ~ 49044777 (+) True G1182587
TU1348632 lncRNA upstream 30400 49033108 ~ 49033385 (+) True G1182585
TU1348631 lncRNA upstream 31564 49029765 ~ 49032221 (+) True G1182584
TU1348679 lncRNA downstream 38960 49104102 ~ 49148293 (+) False G1182627
TU1348686 lncRNA downstream 82225 49147367 ~ 49148293 (+) False G1182627
TU1348683 lncRNA downstream 82636 49147778 ~ 49149924 (+) True G1182627
TU1348662 lncRNA downstream 235059 49300201 ~ 49303631 (+) True G1182611
TU1348768 lncRNA downstream 244958 49310100 ~ 49311267 (+) True G1182700
XR_005035576.1 mRNA upstream 104583 48957777 ~ 48959202 (+) True LOC110486658
XR_005035842.1 mRNA upstream 105020 48958678 ~ 48958765 (+) True LOC118938635
XR_005035843.1 mRNA upstream 105275 48958422 ~ 48958510 (+) True LOC118938636
XR_005035844.1 mRNA upstream 105509 48958189 ~ 48958276 (+) True LOC118938637
XM_036941356.1 mRNA upstream 267757 48762605 ~ 48796028 (+) False LOC110486653
XM_021558431.2 mRNA downstream 34865 49100007 ~ 49104036 (+) True LOC110486662
XM_036941384.1 mRNA downstream 69809 49134951 ~ 49138251 (+) True LOC118936277
XM_036941385.1 mRNA downstream 133704 49198846 ~ 49202693 (+) False LOC110486671
XM_021558440.2 mRNA downstream 135801 49200943 ~ 49202693 (+) False LOC110486671
XM_021558439.2 mRNA downstream 145323 49210465 ~ 49213419 (+) True LOC110486670
TU1348602 other upstream 82382 48978000 ~ 48981403 (+) True G1182555
TU1348583 other upstream 115816 48946749 ~ 48947969 (+) True G1182541
TU1348348 other upstream 502161 48556014 ~ 48561624 (+) True G1182354
TU1348132 other upstream 941210 48119613 ~ 48122575 (+) True G1182153
TU1347905 other upstream 1320721 47742361 ~ 47743064 (+) True G1181955
TU1348688 other downstream 49833 49114975 ~ 49118697 (+) True G1182629
TU1348657 other downstream 135844 49200986 ~ 49202690 (+) True LOC110486671
TU1348666 other downstream 198508 49263650 ~ 49266771 (+) True LOC110486678
TU1348751 other downstream 216517 49281659 ~ 49283503 (+) True LOC110486677
TU1348815 other downstream 354428 49419570 ~ 49426223 (+) False G1182742

Expression Profile