RNA id: TU1349424


Basic Information

Item Value
RNA id TU1349424
length 2303
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1183273
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49295176 ~ 49299864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACAAAAGATAAGAGCTTTTATTCACAGTTAGTCCCTTTTATTCGTTACAGAGGAGTTTCTGGCAGACTAAAGCTAGTCCAGGTGCAGAAAACAAAGGAGCTTATAGAAAACAAAGAGGTAGAACTaaaggaggaaagggaggagggaaaggaggtGAAGACGAGTGTTTTCTTTGggtcctttctcttctctctagcAGCCTTTCACTTCTTGAGAAAAACGTAGCCGTCACTTTAAggagaccatgtttttctctagCCTCATTCCTTCTTAGAATATCTCCTATTTTCCCATCTTGTCTACAGGAGATAACATCTACAATATTTATAGATCGATATCCCTCTGTTTGGTTTATTTGCCCACCTGAGGGTTAAATTAAGGGGGAGTGAAAGGACTTCCAGGTCTAACCTCAGCTGTTGCAGCCGAGGCAAAGACTGGTGCTCCTTTTCACCTTGGGGTTTACACATCCATACCACAGCAGTGGAATACGACTTGCTGTGTGCATTTCTTCTaacagagagactggggaaacAACCAATGATAGGAGTAAGAgatgaaaaggaggaagagggttAAGGGAAGGGAAAGCGgttgagaaagagatggagatgtTAAAAGATCATTTTTATTGAAAATAATCCCATATCCCCACGaacaaacatagacaacccatGAGCACCCGCTCTCACACAAATGTCTTGAGTGGAGACAAGTCTTTTAGAGAatttgtgtgagtgagagacagagcaCATGAGTACACATAAAGAGAATGAAGGTATGAGAAAAtagaaggaagaagagaggagcaggAAGGTAGAATGACAAGGGAGGCTGTTTTCTTTTCTTCTGTCTGTTTCAttactcctccttctcctctccgtGTGTGATGACGTAGCAGATTTGCTTGTAGTCTACGTTGCCGGCCACATCTGGGGGGAAGGCAGCCCACAGGTTCTTCatctgaggggaggagaaggagggtcaGCCACTCGCCAAGTCAAGGGACAACGAGAGATCATGATGATATTCAAACTGAATGATTAGAAATGTATTCACCTCCTCTGCAGAGAACCTGTCGCACTGAGTGGTCAGGAGCTCctgaaggctagagagagagggagacaaagtcAGAAACATTCATGAAGCTGTGGATTCTGTTATGGAGTGCACTCATTACTACAACTGTAAAATAAGGAAGGAAATATTCTCACAAGTCCTTCTTGATGAAACCGGTAGCATCGGGGTCCAAGACCTTGAAAGCACTAACGATGACATCCTCGGGATCAGCCCCTGAGACACACAGAGCGTCAGTCAGGCATGTTACACTGGCAGCAAGACACATGCAATGTCCTCAGATATGGAAGTGTACTTAGAAAGCCACTAACACTTTGAAGCGATTATAACCTGGTTATAACAAGTTAGACAGTGAGCCTAACAGAGTCAAATTAAGAAATTAGGAGATGTGCAACAGAAATAAAGCAAGCAAGTACAGTGAGTTATAGACCCACCCTTGAGCTTCTCTCCGAACATGGTGAGGAAGACGGTGAAGTTGATGGGGCCGCTGGCCTCCTTGACCATGGCTTCCAGCTCCTCATTCTTCACATTCAACTGGCCTACAGAGCAGGGAGGGAGTGTAGGTTAGCTAGAACcattatctatctatctctctctctctctctctctctctctctctctctctctcttacacacacacaaccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacatatatacagtacattgtggACATACTAAGGCACACTTTTAATAGAGACAAGTCAGTCACATATGTCCTCAGAATCTTAAAAGGTCTTAAATGTAACCCTTGCTCACCCATTGAGGCCAGCACGTCCCTTAAGTCATCCTTGCTGATGATACCGTCTCTGTTCTGGTCAATGATTGTGAAAGCCTTGTACTCCTGGATCTGGCTCTGCTCAAACATGGAGAACACGTTGGAGGAACCGCCCTCTGCTGCTGCTCCCCTCCTCTTGGCCTTCTTGGGTGCATCTCGAGACGGTGTGTATGGAGGTTTGGATGGTCAACAAGAGAAGAGACTGATGTGAAGCCGCATTAAACCCCTATCCTCGGGGGCTTATATACCTCTGTAGACCGCGCTAACTTTAGCCACAGCCTCAAGTTTGGATttgtagaggcagagagagggagagagggagggatgagtttGAAGCAAAAGTTAAGCGACAGGCAGAATGAGGGACAAGCTATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349743 lncRNA downstream 125832 49168686 ~ 49169344 (-) True G1183512
TU1349746 lncRNA downstream 150992 49143255 ~ 49144184 (-) True G1183515
TU1349702 lncRNA downstream 193292 49099736 ~ 49101884 (-) True G1183493
TU1349695 lncRNA downstream 214228 49079132 ~ 49080948 (-) True LOC110487553
TU1349681 lncRNA downstream 250403 49044511 ~ 49044773 (-) True G1183473
TU1349803 lncRNA upstream 17418 49317282 ~ 49317483 (-) True G1183567
TU1349461 lncRNA upstream 25163 49325027 ~ 49325527 (-) True G1183297
TU1349825 lncRNA upstream 133073 49432937 ~ 49433171 (-) True G1183588
TU1349827 lncRNA upstream 135904 49435768 ~ 49435981 (-) True G1183590
TU1349829 lncRNA upstream 139287 49439151 ~ 49439353 (-) True G1183592
XM_021558447.2 mRNA downstream 14066 49278149 ~ 49281110 (-) True cd2bp2
XM_021558445.2 mRNA downstream 17377 49267608 ~ 49277799 (-) False prr14
XM_036941388.1 mRNA downstream 17377 49267608 ~ 49277799 (-) True prr14
XM_036941389.1 mRNA downstream 31841 49251627 ~ 49263335 (-) True rusf1
XM_036941390.1 mRNA downstream 32673 49251627 ~ 49262503 (-) False rusf1
XM_021558449.2 mRNA upstream 289 49300153 ~ 49312987 (-) False LOC110486679
XM_021558448.2 mRNA upstream 289 49300153 ~ 49312989 (-) True LOC110486679
XM_021558451.2 mRNA upstream 26858 49326722 ~ 49339857 (-) True hsd3b7
XM_036941391.1 mRNA upstream 46676 49346540 ~ 49360939 (-) False setd1a
XM_036941393.1 mRNA upstream 46676 49346540 ~ 49360941 (-) False setd1a
TU1349479 other downstream 317768 48973183 ~ 48977408 (-) True LOC110485205
TU1349473 other downstream 358719 48897679 ~ 48936457 (-) True LOC110486656
TU1349502 other downstream 627094 48667788 ~ 48668082 (-) True G1183337
TU1349369 other downstream 824193 48435826 ~ 48470983 (-) True G1183225
TU1349334 other downstream 905458 48379267 ~ 48389718 (-) True G1183196
TU1349475 other upstream 56514 49356378 ~ 49357214 (-) True setd1a
TU1349433 other upstream 187062 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other upstream 187062 49486926 ~ 49504010 (-) True LOC110486687
TU1349444 other upstream 237335 49537199 ~ 49544276 (-) True LOC118938314
TU1349952 other upstream 385474 49685338 ~ 49688456 (-) True G1183706

Expression Profile