Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042840 |
| length | 951 |
| lncRNA type | retained_intron |
| GC content | 0.38 |
| exon number | 4 |
| gene id | XLOC_021580 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 17509794 ~ 17550653 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0090263 | positive regulation of canonical Wnt signaling pathway | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048263 | determination of dorsal identity | biological_process |
| GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040718-380 | Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior axial hypoblast; axis; cranium; hatching gland; and polster. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human SLC17A9 (solute carrier family 17 member 9). |
| ensembl_id | ENSDART00000147462 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044806 | lncRNA | upstream | 65271 | 17473119 ~ 17477448 (+) | True | XLOC_021578 |
| TCONS_00044805 | lncRNA | upstream | 121283 | 17412525 ~ 17421436 (+) | False | XLOC_021576 |
| TCONS_00044668 | lncRNA | upstream | 287962 | 17254498 ~ 17254757 (+) | True | XLOC_021573 |
| TCONS_00044804 | lncRNA | upstream | 331445 | 17146315 ~ 17211274 (+) | False | XLOC_021571 |
| TCONS_00044803 | lncRNA | upstream | 641483 | 16889209 ~ 16901236 (+) | False | XLOC_021567 |
| TCONS_00044807 | lncRNA | downstream | 1034 | 17547112 ~ 17550653 (+) | True | XLOC_021580 |
| TCONS_00042841 | lncRNA | downstream | 110758 | 17656836 ~ 17659102 (+) | True | XLOC_021581 |
| TCONS_00044808 | lncRNA | downstream | 224346 | 17770424 ~ 17776345 (+) | True | XLOC_021582 |
| TCONS_00042842 | lncRNA | downstream | 236430 | 17782508 ~ 17783044 (+) | True | XLOC_021583 |
| TCONS_00042847 | lncRNA | downstream | 293262 | 17839340 ~ 17842760 (+) | True | XLOC_021586 |
| TCONS_00042838 | mRNA | upstream | 19335 | 17512037 ~ 17523384 (+) | False | XLOC_021580 |
| TCONS_00042837 | mRNA | upstream | 21944 | 17509794 ~ 17520775 (+) | False | XLOC_021580 |
| TCONS_00042835 | mRNA | upstream | 77487 | 17437554 ~ 17465232 (+) | True | XLOC_021577 |
| TCONS_00042834 | mRNA | upstream | 95556 | 17417539 ~ 17447163 (+) | True | XLOC_021576 |
| TCONS_00042833 | mRNA | upstream | 138708 | 17387325 ~ 17404011 (+) | True | XLOC_021575 |
| TCONS_00042844 | mRNA | downstream | 254639 | 17800717 ~ 17815253 (+) | False | XLOC_021585 |
| TCONS_00042845 | mRNA | downstream | 254761 | 17800839 ~ 17814778 (+) | True | XLOC_021585 |
| TCONS_00042846 | mRNA | downstream | 293109 | 17839187 ~ 17848907 (+) | False | XLOC_021586 |
| TCONS_00042849 | mRNA | downstream | 319476 | 17865554 ~ 17876777 (+) | False | XLOC_021587 |
| TCONS_00042848 | mRNA | downstream | 319476 | 17865554 ~ 17876777 (+) | False | XLOC_021587 |
| TCONS_00042836 | other | upstream | 41291 | 17501314 ~ 17501428 (+) | True | XLOC_021579 |
| TCONS_00042829 | other | upstream | 330913 | 17187884 ~ 17211806 (+) | True | XLOC_021571 |
| TCONS_00042828 | other | upstream | 331445 | 17146561 ~ 17211274 (+) | False | XLOC_021571 |
| TCONS_00042827 | other | upstream | 395728 | 17146315 ~ 17146991 (+) | False | XLOC_021571 |
| TCONS_00042824 | other | upstream | 597278 | 16937629 ~ 16945441 (+) | True | XLOC_021568 |
| TCONS_00042843 | other | downstream | 237335 | 17783413 ~ 17783541 (+) | True | XLOC_021584 |
| TCONS_00042853 | other | downstream | 327448 | 17873526 ~ 17873598 (+) | True | XLOC_021588 |
| TCONS_00042854 | other | downstream | 327994 | 17874072 ~ 17874147 (+) | True | XLOC_021587 |
| TCONS_00042869 | other | downstream | 742996 | 18289074 ~ 18289201 (+) | True | XLOC_021598 |
| TCONS_00042875 | other | downstream | 1142279 | 18688357 ~ 18691482 (+) | False | XLOC_021600 |
