RNA id: TU1348775


Basic Information

Item Value
RNA id TU1348775
length 249
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G1182705
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49319803 ~ 49320131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctctggctcaccccGCTTTGGGGGCACCTCTGgtgtggggaccctcgctgcgggccctgGACTGGAGgccgttgctggaggctccggactggaggacgtcgctggaggcttcgtgccatgactcctcactggaggcttcgtgccatggatccccactggaggcttcgtgccattgatcatcactggaggcttcgtgccattgatcatcactgcaggcttcgtgccatggattatcacttgagtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348768 lncRNA upstream 8536 49310100 ~ 49311267 (+) True G1182700
TU1348662 lncRNA upstream 16172 49300201 ~ 49303631 (+) True G1182611
TU1348683 lncRNA upstream 169879 49147778 ~ 49149924 (+) True G1182627
TU1348679 lncRNA upstream 171510 49104102 ~ 49148293 (+) False G1182627
TU1348686 lncRNA upstream 171510 49147367 ~ 49148293 (+) False G1182627
TU1348777 lncRNA downstream 3807 49323938 ~ 49324173 (+) True G1182707
TU1348781 lncRNA downstream 30264 49350395 ~ 49352361 (+) True G1182711
TU1348796 lncRNA downstream 43918 49364049 ~ 49365202 (+) True G1182724
TU1348797 lncRNA downstream 66091 49386222 ~ 49388178 (+) True G1182725
TU1348824 lncRNA downstream 118847 49438978 ~ 49439207 (+) True G1182750
NM_001124679.1 mRNA upstream 20552 49295336 ~ 49299251 (+) True LOC100136718
LOC110486677 mRNA upstream 35687 49281106 ~ 49284116 (+) False LOC110486677
XR_002468097.2 mRNA upstream 53036 49263529 ~ 49266767 (+) False LOC110486678
XM_021558439.2 mRNA upstream 106384 49210465 ~ 49213419 (+) True LOC110486670
XM_021558440.2 mRNA upstream 117110 49200943 ~ 49202693 (+) False LOC110486671
XM_021558453.2 mRNA downstream 50107 49370238 ~ 49384522 (+) True LOC110486684
XM_021558462.2 mRNA downstream 202399 49522530 ~ 49530730 (+) False LOC110486690
XM_021558463.2 mRNA downstream 202399 49522530 ~ 49530730 (+) False LOC110486690
XM_021558466.2 mRNA downstream 202399 49522530 ~ 49530730 (+) False LOC110486690
XM_021558464.2 mRNA downstream 202412 49522543 ~ 49530733 (+) False LOC110486690
TU1348751 other upstream 36300 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 53032 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 117113 49200986 ~ 49202690 (+) True LOC110486671
TU1348688 other upstream 201106 49114975 ~ 49118697 (+) True G1182629
TU1348645 other upstream 254661 49063785 ~ 49065142 (+) True G1182595
TU1348815 other downstream 99439 49419570 ~ 49426223 (+) False G1182742
TU1348816 other downstream 99439 49419570 ~ 49422762 (+) True G1182742
TU1348832 other downstream 260195 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 512090 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 562690 49882821 ~ 49883435 (+) True G1183875

Expression Profile