RNA id: TU1348797


Basic Information

Item Value
RNA id TU1348797
length 1476
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1182725
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49386222 ~ 49388178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGCTTCAAGAAACCTTTACAGAACAAGAAAGGCTTAAAAAACAGAGTTACATTCTCCTGAAACTCAAAAACATCTTGAAACTGGGATTCTGGGAAAATGACACTATCCCAGTGACATCACTTGATTGGCAGATTCCATCCACATCACTTCCTCCCAGGTGGGCATCAAACATGAAAGGTGTTTATAATGCTTCACAAGTGCTACATAACCAGAGCATAAAAGAGATGAGAAAACTGTCTGCTTTTTTCCCATGTCAATTATCTGTTCTCATGACCCCTGACAATGTTGACTCAATAATGAGACATGTCACTTCATGTTAACAAATATTGCTTTCCATTAAGTCATATGATTGGTAGAACATGAGAGTAGAATTACTGTATTCAAAATGGCCACTTTTACAGTAGTCATTCCTACCATACAGACATAAACAGTATTTAGATGGCATTCATACCATCTCTTTATATCATCTGTTGATAATATGttacaccaacatagaaatagtgTGAAAGAAATACATGTGTGCGTTCATAACTATTAGGTTTCCAGATTGACGGTAAGATCCTCATGATACTATAAAAATACGTTTCAGTTCAACCTATAAACAGCACTGAGCCTGAATGTGCAGTTCCTCTACAgtgtaaacatacagtacacacagttaTATGTATTTTTGGCCAAATTCTTATCTCCCAACAAAAAGGACCATGGCATAAAAGGACCATCACTTAACAAAAGGCAAAGGAGAGAGGAATGACAATACTACAGCTTTGAGATCCAGGGAAAAGGGGGCTTGGGGTTATTGTTAGTGTCCGTGtgacgtgtgtgtacgtgtgcttcTAGTCAGCCCAGTTTCATATCAGATCTCCATAGGCAGTGCCAGGCCACCAGGCTTTGTGGGGTCTGGGTTGCAGAAATCCTAAACCCCTCTCAATAATGCCCTAGACCCtgatagagaggagaggttgtTTGTCACACAGGACCAGAGGTGCCCCAGCCCCGGGCACTGTGAGTCAGTGAGTGGGGGCCCTCCATAGAACCTCCTCTCAGCTATGTGGAAGGCAACCCACGTTGATCAGCAGCATGGTACAGGTTAGGGGGTTGGGtggggattggagaggaggaatgagagatTTGACGATTAGAGAAGTGACTCTGCCAACATATGATTGTCCTCCTGTGGTGGTGCAGGGGGTGCTAGGAGTGAGGGATGATCAGGTTtaaggttaaaggtcagaggGTTTTAGCTGCCTGGCAGGATGGGGTCAGAAATGTGCCTCTGAATCTCCTGCCCCTCTGTGGAGGTCTCCAGGttgtcagggagggaggggaaacgCAGGCTGCCACACAGCAGTCCAGAGGGCCCCAGGGTTTGGCAGGAGACATGGGGGAGGCTGAAGCCCATGGAGGACCCTGGAAGGGGCTCTGTCTCAGGGGACATGGACATGGTGTCATCAGAGGAGTCCTTGGACTTGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1348796 lncRNA upstream 21020 49364049 ~ 49365202 (+) True G1182724
TU1348781 lncRNA upstream 33861 49350395 ~ 49352361 (+) True G1182711
TU1348777 lncRNA upstream 62049 49323938 ~ 49324173 (+) True G1182707
TU1348775 lncRNA upstream 66091 49319803 ~ 49320131 (+) True G1182705
TU1348768 lncRNA upstream 74955 49310100 ~ 49311267 (+) True G1182700
TU1348824 lncRNA downstream 50800 49438978 ~ 49439207 (+) True G1182750
TU1348827 lncRNA downstream 53547 49441725 ~ 49441944 (+) True G1182753
TU1348831 lncRNA downstream 58277 49446455 ~ 49446770 (+) True G1182757
TU1348835 lncRNA downstream 60070 49448248 ~ 49448677 (+) True G1182761
TU1348834 lncRNA downstream 60607 49448785 ~ 49449921 (+) True G1182760
XM_021558453.2 mRNA upstream 1700 49370238 ~ 49384522 (+) True LOC110486684
NM_001124679.1 mRNA upstream 86971 49295336 ~ 49299251 (+) True LOC100136718
LOC110486677 mRNA upstream 102106 49281106 ~ 49284116 (+) False LOC110486677
XR_002468097.2 mRNA upstream 119455 49263529 ~ 49266767 (+) False LOC110486678
XM_021558439.2 mRNA upstream 172803 49210465 ~ 49213419 (+) True LOC110486670
XM_021558462.2 mRNA downstream 134352 49522530 ~ 49530730 (+) False LOC110486690
XM_021558463.2 mRNA downstream 134352 49522530 ~ 49530730 (+) False LOC110486690
XM_021558466.2 mRNA downstream 134352 49522530 ~ 49530730 (+) False LOC110486690
XM_021558464.2 mRNA downstream 134365 49522543 ~ 49530733 (+) False LOC110486690
XM_021558467.2 mRNA downstream 134368 49522546 ~ 49530733 (+) False LOC110486690
TU1348751 other upstream 102719 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 119451 49263650 ~ 49266771 (+) True LOC110486678
TU1348657 other upstream 183532 49200986 ~ 49202690 (+) True LOC110486671
TU1348688 other upstream 267525 49114975 ~ 49118697 (+) True G1182629
TU1348645 other upstream 321080 49063785 ~ 49065142 (+) True G1182595
TU1348815 other downstream 31392 49419570 ~ 49426223 (+) False G1182742
TU1348816 other downstream 31392 49419570 ~ 49422762 (+) True G1182742
TU1348832 other downstream 192148 49580326 ~ 49584562 (+) True ndua4
TU1350070 other downstream 444043 49832221 ~ 49835014 (+) True G1183819
TU1350149 other downstream 494643 49882821 ~ 49883435 (+) True G1183875

Expression Profile