RNA id: TU1349869


Basic Information

Item Value
RNA id TU1349869
length 979
lncRNA type read_through
GC content 0.41
exon number 4
gene id G1183629
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49580294 ~ 49663941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAAAAAAACTCCTTCACTTTATTGCTGCACAACCATGAGGTATGAGggaatttttcattttttaaagatgGTTAAAAGGTCAAAGGGGACAGAACTTGTGCAGTTTATCCTCTTTGCATCCACTGGTTTCAAGTTAGAGGTGTAAGGGAAGTCATTTTTTTCCTCAAGTCTTTGGTCCAGCAGAAGACTTTAGAAGTCAGGACCCTCTTTCTTCAGCTTGCTGTAGTCCATGTTCACTGAATAAAACTATGAATTAAATAAAGGAACAATAAAGTTTAAGGAAATCAGAAATCAAATATTGATGAATAACATTCTAAGCAAAAACCTGCCTTTACTTTCTGAATCATTCCCAGGTCTGTTATTTAGTCCGTGTCAAActtgctttgttgttgttgtaactgACAATTAGATAGGTTGATCAGATTACTTAAACTAACAGGATTATACTGTATAATTAATTCTACTATGGGATGAGTGGAATCAGACAGCTCAATTACATTTTTGGCTCAAGCCACTACATTAACATGTTCCCTCACTGCGCTGTACAACCTCTGCTCAAGACCATGTGCGGCAGGGACCAAGTTTAATGCACTGACCATCGTGATACATTAATCCAGACATAACGGATCATCCTGTAAGTGAGTGACCTACCTTGTGCTGCTGTGTGGGTTCCGTCTTGTTCCATGGCTCGGGGTTGCCATTGCGATTCCAACTACAacCTGACATGGGGTCCCATTGCCAGGCGCAAGAGATACGCTCCAGACATAACCGTCCCACCACCGATGAAGATGAAAAGGGGGACTGCTGGGTGGCTTTTAAGTTGCCGGCTAACTGTGCTCAGCATTGTGAGGGTTTACTTCTCCCAATTTGTACAGAAATAACCGGATTAATGTAGGCCTTGCCAGGAAGTAGCTGAGCGTATTTTCAGATGCGTTTCAGAGACATCAATgatttttataactaacccaagatagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349871 lncRNA downstream 3061 49571718 ~ 49577233 (-) True G1183630
TU1349883 lncRNA downstream 10116 49569974 ~ 49570178 (-) True G1183641
TU1349863 lncRNA downstream 56128 49523584 ~ 49524166 (-) True G1183624
TU1349859 lncRNA downstream 68280 49511738 ~ 49512014 (-) True G1183620
TU1349848 lncRNA downstream 106538 49473432 ~ 49473756 (-) True G1183609
TU1349974 lncRNA upstream 50971 49714912 ~ 49715441 (-) True G1183728
TU1349979 lncRNA upstream 70290 49734231 ~ 49734448 (-) True G1183733
TU1349980 lncRNA upstream 70675 49734616 ~ 49734820 (-) True G1183734
TU1349985 lncRNA upstream 72919 49736860 ~ 49737093 (-) True G1183739
TU1349992 lncRNA upstream 75374 49739315 ~ 49739617 (-) True G1183746
XR_005035578.1 mRNA downstream 38545 49537569 ~ 49541749 (-) False LOC118938314
XM_021558470.2 mRNA downstream 46704 49530771 ~ 49533590 (-) True LOC110486692
XM_021558460.2 mRNA downstream 57772 49516312 ~ 49522522 (-) True LOC110486688
XM_021558461.2 mRNA downstream 58337 49515050 ~ 49521957 (-) False LOC110486688
XM_036941396.1 mRNA downstream 75475 49486817 ~ 49504819 (-) False LOC110486687
XR_005035579.1 mRNA upstream 167126 49831067 ~ 49853671 (-) False LOC110486698
XM_036941404.1 mRNA upstream 171137 49835078 ~ 49853671 (-) False LOC110486698
XM_021558479.2 mRNA upstream 306781 49970722 ~ 50040333 (-) True LOC110486699
XM_036941405.1 mRNA upstream 395093 50059034 ~ 50067398 (-) False si:ch211-214j24.15
XM_021558480.2 mRNA upstream 395094 50059035 ~ 50067395 (-) False si:ch211-214j24.15
TU1349444 other downstream 36018 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 76284 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other downstream 76284 49486926 ~ 49504010 (-) True LOC110486687
TU1349475 other downstream 223080 49356378 ~ 49357214 (-) True setd1a
TU1349479 other downstream 602886 48973183 ~ 48977408 (-) True LOC110485205
TU1349952 other upstream 21397 49685338 ~ 49688456 (-) True G1183706
TU1350091 other upstream 171722 49835663 ~ 49836332 (-) True LOC110486698
TU1351387 other upstream 962706 50626647 ~ 50628539 (-) True G1184986
TU1351422 other upstream 1092697 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 1116324 50780265 ~ 50781858 (-) True G1185046

Expression Profile