RNA id: TU1349952


Basic Information

Item Value
RNA id TU1349952
length 619
RNA type TUCP
GC content 0.36
exon number 2
gene id G1183706
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49685338 ~ 49688456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttacacacactaattaataaacacgtccaccaaaaaaaagagggcaaaatctttgcttgctttattgactttaaaaaagcatttgattcgatttggcatgaagggctattctacaaaattctacaaagtgggcttggtggtaaggtgtatgacttaataaaatgtatgtacacagaaaacaagtgtgcaataaaaatcaaaaaccaaagaacagaatttttttcacaatgtcgaggtgtgagacaaggctgcaatttgagtccaaatcttttcaacatttatatcaatgaattagcagacatgttggaccaatctccagccccaggactcacactatttgacacagaggtgaaatacctgctatatgctgatgacttggtacttctatcaccaaccaaagaaggtcttcaacaaaacattaatattctggagcaatattgccataattgggccctggcagtaaatttccaaaaaactaaaatcatgattttccaaaaaaaaaccagatgtcagaaacacaaatgtaaattcaccctgaacaacaccttaattgaacacacaaaacattacacctaccttggtctgaccatatctgcatcgggaaactttaatatggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349869 lncRNA downstream 21397 49580294 ~ 49663941 (-) True G1183629
TU1349895 lncRNA downstream 52636 49607459 ~ 49632702 (-) True G1183653
TU1349871 lncRNA downstream 108105 49571718 ~ 49577233 (-) True G1183630
TU1349883 lncRNA downstream 115160 49569974 ~ 49570178 (-) True G1183641
TU1349863 lncRNA downstream 161172 49523584 ~ 49524166 (-) True G1183624
TU1349974 lncRNA upstream 26456 49714912 ~ 49715441 (-) True G1183728
TU1349979 lncRNA upstream 45775 49734231 ~ 49734448 (-) True G1183733
TU1349980 lncRNA upstream 46160 49734616 ~ 49734820 (-) True G1183734
TU1349985 lncRNA upstream 48404 49736860 ~ 49737093 (-) True G1183739
TU1349992 lncRNA upstream 50859 49739315 ~ 49739617 (-) True G1183746
XR_005035578.1 mRNA downstream 143589 49537569 ~ 49541749 (-) False LOC118938314
XM_021558470.2 mRNA downstream 151748 49530771 ~ 49533590 (-) True LOC110486692
XM_021558460.2 mRNA downstream 162816 49516312 ~ 49522522 (-) True LOC110486688
XM_021558461.2 mRNA downstream 163381 49515050 ~ 49521957 (-) False LOC110486688
XM_036941396.1 mRNA downstream 180519 49486817 ~ 49504819 (-) False LOC110486687
XR_005035579.1 mRNA upstream 142611 49831067 ~ 49853671 (-) False LOC110486698
XM_036941404.1 mRNA upstream 146622 49835078 ~ 49853671 (-) False LOC110486698
XM_021558479.2 mRNA upstream 282266 49970722 ~ 50040333 (-) True LOC110486699
XM_036941405.1 mRNA upstream 370578 50059034 ~ 50067398 (-) False si:ch211-214j24.15
XM_021558480.2 mRNA upstream 370579 50059035 ~ 50067395 (-) False si:ch211-214j24.15
TU1349444 other downstream 141062 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 181328 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other downstream 181328 49486926 ~ 49504010 (-) True LOC110486687
TU1349475 other downstream 328124 49356378 ~ 49357214 (-) True setd1a
TU1349479 other downstream 707930 48973183 ~ 48977408 (-) True LOC110485205
TU1350091 other upstream 147207 49835663 ~ 49836332 (-) True LOC110486698
TU1351387 other upstream 938191 50626647 ~ 50628539 (-) True G1184986
TU1351422 other upstream 1068182 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 1091809 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 1633344 51321800 ~ 51323931 (-) True G1186080

Expression Profile