RNA id: TU1349993


Basic Information

Item Value
RNA id TU1349993
length 638
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1183747
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49753253 ~ 49753890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccagtcaacacaacacgtctctatatcctccacagcattaaccagtcaacacaacacgtctcaataccctccacagcattaaccagtcaacacaacacgtctctatatcctccacagaattaaccagtcaacacaacacttctctataccctccagagcattaaccagtcaacacaacacgtctctatactctccacagcattaaccagtcaacaagcCTCTATACCCTcgacagcattaaccagtcaacacaacacgtctctataccctccacagcattaaccagtcaacacaacacatctctatatcctccacagcattaaccagtcaacacaacacgtctctatactctccacagcattaaccagtcaacacgtctctataccctccacagcattaaccagtcaacaaaacacgtctctataccctccacagcattaaccagtcaacacaacacgtctatatatcctccacagattgaccagtcaacacaacacgtctcaataccctccacactcattaaccagtcaacacaacacgtctcaataccctccacagcattaaccagtcaacacaacacgtctctatatccTCGACAGCATCAACCAGTCAACACATCTCTATACCCTCCAGagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1349992 lncRNA downstream 13636 49739315 ~ 49739617 (-) True G1183746
TU1349985 lncRNA downstream 16160 49736860 ~ 49737093 (-) True G1183739
TU1349980 lncRNA downstream 18433 49734616 ~ 49734820 (-) True G1183734
TU1349979 lncRNA downstream 18805 49734231 ~ 49734448 (-) True G1183733
TU1349974 lncRNA downstream 37812 49714912 ~ 49715441 (-) True G1183728
TU1349994 lncRNA upstream 1671 49755561 ~ 49756124 (-) True G1183748
TU1349998 lncRNA upstream 7684 49761574 ~ 49761882 (-) True G1183752
TU1350029 lncRNA upstream 27605 49781495 ~ 49781706 (-) True G1183781
TU1350031 lncRNA upstream 33995 49787885 ~ 49788214 (-) True G1183783
TU1350033 lncRNA upstream 39291 49793181 ~ 49794994 (-) True G1183785
XR_005035578.1 mRNA downstream 211504 49537569 ~ 49541749 (-) False LOC118938314
XM_021558470.2 mRNA downstream 219663 49530771 ~ 49533590 (-) True LOC110486692
XM_021558460.2 mRNA downstream 230731 49516312 ~ 49522522 (-) True LOC110486688
XM_021558461.2 mRNA downstream 231296 49515050 ~ 49521957 (-) False LOC110486688
XM_036941396.1 mRNA downstream 248434 49486817 ~ 49504819 (-) False LOC110486687
XR_005035579.1 mRNA upstream 77177 49831067 ~ 49853671 (-) False LOC110486698
XM_036941404.1 mRNA upstream 81188 49835078 ~ 49853671 (-) False LOC110486698
XM_021558479.2 mRNA upstream 216832 49970722 ~ 50040333 (-) True LOC110486699
XM_036941405.1 mRNA upstream 305144 50059034 ~ 50067398 (-) False si:ch211-214j24.15
XM_021558480.2 mRNA upstream 305145 50059035 ~ 50067395 (-) False si:ch211-214j24.15
TU1349952 other downstream 64797 49685338 ~ 49688456 (-) True G1183706
TU1349444 other downstream 208977 49537199 ~ 49544276 (-) True LOC118938314
TU1349433 other downstream 249243 49486926 ~ 49504010 (-) False LOC110486687
TU1349434 other downstream 249243 49486926 ~ 49504010 (-) True LOC110486687
TU1349475 other downstream 396039 49356378 ~ 49357214 (-) True setd1a
TU1350091 other upstream 81773 49835663 ~ 49836332 (-) True LOC110486698
TU1351387 other upstream 872757 50626647 ~ 50628539 (-) True G1184986
TU1351422 other upstream 1002748 50756638 ~ 50758044 (-) False LOC110485208
TU1351447 other upstream 1026375 50780265 ~ 50781858 (-) True G1185046
TU1352616 other upstream 1567910 51321800 ~ 51323931 (-) True G1186080

Expression Profile