RNA id: TU1350070


Basic Information

Item Value
RNA id TU1350070
length 2722
RNA type TUCP
GC content 0.45
exon number 2
gene id G1183819
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49832221 ~ 49835014 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagagtagctgctgcttctgcaaaagctaatggggatcccaataaacaaacaaataaagtGCACTTGGACTCCAATATGTTTTGAATACTGTCTAGACTGTGCATGCTTACTACTGTATAATGATATTCTATTGATGGTTGCATGGGGCACATTTTCCCAAAAGGTAGCAAGCACTAACAACTAATGCAGAGCATTACATCATTTTTTGTCTTCAATCGCTTCCTTTCATGTTTAATTTGTTCCTAAGAGGTCCAAAACAGCCTCTTAACAATTGCAAATATTCACCAGAAAGCTGTCATGCAAACAACAGTAATCtgaatgtaatgtttacatgTCAAATACTGACTTAATAAATCCCAAACAAATTGTTTAGGAAAGGAGTATTGTACACTCATTTCACTTGAAATTAGCTCATTCAGATTACTGGACTCTTGTGGACGGGTGTTTACTTTTTAAATTCAGACTCATTGAATTCCGACTAATTCCAGATTATTAGTGTGCATTTAAACACAGCAGGTGTGACTATGAGGATTGACTGTGACACAAGTGATTAAACCAGACAGATCTATTTTACAAACATCATCTCAACAAGGGAGAACCACCGCAGCCAAACCACTGCATATTGTCTTTTCAAGTAAAACATTTGCTCAGAGGAAAAACAAATCAACCGGAAGCATCAGGGGTCTGAAGTGTAGATTGGGGTTTATGTGTCTGAATAAACAGTAATATCTTAAAAGATAATTTAGTCTTTGTGATGTTAGTGGTTAATGTTCCCTGCTGGACCCTGCAGGGCTGTTCAAGTAGCAGTAGAGACAGGCGGTCAGAGGGAGGCAGCAGAGACAGGCGGtcagagagaggcagcagagacaGGCGGtcagagagaggcagcagagacaGGCGGtcagagagaggcagcagagacaggtggtcagagagaggcggtcagagagaggcagcagagacaGGCGGtcagagagaggcagcagagaggcagtctaagagaggcagcagagaggcagTCTAAGAGAGGCAGCAACTGCAGCAACGGCAGCAGAGAGAGGCAGTAGAGAGGCAGCAACGGCAGCAGAGAGAGGCAGTCTGAGAGAGGCAGTCTAAGAGAGGCAGCAACGGCAGCAGAGAGAGGCAGTctgagagaggcagcagagaggcagTCTAAGAGAGGCAGCAactgcagcagagagaggcagCCTGAGAGAGGCAGTCTGAGAGAAGCAGCAACGGCAGCAGCCTAACAGAGATGTTGTGGTTATGGCCTCATAAAGACAGGAGCTACCCGCCTCTTTAACAGTAaattaaacacacagacactttgATGTTCAGATCTCACTTACAGTACTTCCTATATATAGCCTTGTGAGTGAGCCTTTCTCTCttttattctgtctctctcttctattccACCTATACAGTCAAATTGCTCCATCTCTACCTGACGTGATGCTCCCGTACCCCCCACAGGAGGAGGACTTTATAGTGAGTGGTTCCTGATCCAAGTCACACACTGGCCTCCCAGGCCTCAGTGCTACAGAAACCTCACTAAGCTCTCTCCAGACCAATCAGAGCACAGCAGTGCCAAAGGCCATGGGGTTCAATCACTTCCGTTACAATGAGGTTTTTCCTTTTTACAAATACATTAGTAATACCATATCTTATGCATTCAGTGTTCAAAGTATGACACCTGCCATTGGAAAATACAGAGTCAGGAAATCACGTAGTCTATATAGGTGCTATGAGTCAATTTCCAAACAGCCCATATTGTCAGTACAGAATCAGTTGTCCCTAAAttagatatatacagtattttgtcTAGTGTTGTTGTTTGTGAATTGGACATGAGTTCAGCCAGCCAGTGGCTATTCATCTTGATGAGATAGCAGTTAACTGAGGGCTAAGCTGCTGGGCCAGGGAGCCATAACACAACTATCCACTATACCCCTCGCTGTGCTCCTCGCTCGCATCCTAATAATCCTAACTTGATTTCCAGGAATACATTTCGCCTTCTCTCGGTGAAGCCTTAATTAGTTTTATTTTAATGTATTCCAGATAACGATCAGACTTTGGTGAACACACAGCGTTTGTCAGGAAAGAGAAATCAAGCACACACAGCCAAAGTTATCAAAGCTTGAAATCAGGAATCCTGACTGCAACAAAATGTAATCTTTTTCATACAGAGGGGACAATAGAAGGAGCTGAATTCTCtacatctccttctctctattcCACTTTAATTAAAAGAGCTCTCTGAATCTCtcatttctccccctctccctctcccacttttgttctctctctctctctctctctctctctttctctctctccctctttcattctttctttctttctcaatcTATATTTTCTATGTCAAAGAGGTTACATAattcagggaaagagagagatgatgtTTGACAGAATGTCATACCTTTAGAATAAACattggatggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatagcCTATCGGGATGACataggggtggggagagagaggggtgggatagcCTATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350048 lncRNA upstream 22061 49809951 ~ 49810160 (+) True G1183800
TU1350042 lncRNA upstream 27222 49804776 ~ 49804999 (+) True G1183794
TU1349997 lncRNA upstream 70330 49761692 ~ 49761891 (+) True G1183751
TU1349995 lncRNA upstream 71495 49760514 ~ 49760726 (+) True G1183749
TU1349991 lncRNA upstream 92623 49739134 ~ 49739598 (+) True G1183745
TU1350071 lncRNA downstream 90 49835104 ~ 49836400 (+) False G1183820
TU1350075 lncRNA downstream 90 49835104 ~ 49836274 (+) False G1183820
TU1350074 lncRNA downstream 164 49835178 ~ 49836400 (+) False G1183820
TU1350072 lncRNA downstream 655 49835669 ~ 49836400 (+) False G1183820
TU1350076 lncRNA downstream 655 49835669 ~ 49836274 (+) True G1183820
XM_036939763.1 mRNA upstream 32382 49799387 ~ 49799839 (+) True LOC118938084
XM_021558476.2 mRNA upstream 118607 49607479 ~ 49713614 (+) True LOC110486697
NM_001246328.1 mRNA upstream 247668 49580324 ~ 49584553 (+) False ndua4
XM_021558475.2 mRNA upstream 254952 49571508 ~ 49577269 (+) True LOC110486696
XM_036941403.1 mRNA upstream 264396 49558788 ~ 49567825 (+) False LOC110486695
XR_005035581.1 mRNA downstream 233878 50068892 ~ 50072063 (+) False LOC110486702
LOC110486703 mRNA downstream 238591 50073605 ~ 50076256 (+) False LOC110486703
NM_001124717.2 mRNA downstream 244267 50079281 ~ 50090656 (+) False LOC100136769
XM_021558485.2 mRNA downstream 256323 50091337 ~ 50113963 (+) False LOC110486704
XM_021558486.2 mRNA downstream 256323 50091337 ~ 50113963 (+) False LOC110486704
TU1348832 other upstream 247659 49580326 ~ 49584562 (+) True ndua4
TU1348815 other upstream 405998 49419570 ~ 49426223 (+) False G1182742
TU1348816 other upstream 409459 49419570 ~ 49422762 (+) True G1182742
TU1348751 other upstream 548718 49281659 ~ 49283503 (+) True LOC110486677
TU1348666 other upstream 565450 49263650 ~ 49266771 (+) True LOC110486678
TU1350149 other downstream 47807 49882821 ~ 49883435 (+) True G1183875
TU1350772 other downstream 1150799 50985813 ~ 50986566 (+) True G1184435
TU1351847 other downstream 1549158 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 1610893 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 1792668 51627682 ~ 51628676 (+) True G1185521

Expression Profile