RNA id: TCONS_00042851


Basic Information

Item Value
RNA id TCONS_00042851
length 2800
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_021587
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17865554 ~ 17876777 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCATCTTGGATCCTGTGCCCTGAACTATCCAGAATGCCAGGCGAAGCCACAGAAACTGTCCCTGTTACAGAGCAGGAGATGCAGCAGCCCCAGGCTGAGACGGCCACACCTGCTGCTGCAGCCCCTGCCCCCTCTCAGGCAAAGTCTAAAGATGGCAAAACTAACCCTAAACTGTCCTCATCTCCTCATACCACTGCTCCTAAGCCAGTTCCTGCAGGACGCAGGAAACGCTCTTCTCTGTCTGCTTCCTCAAGCTCTCCTACTTCTCCTAAATCTGCCTCCGGCCCTCGTGCTACCCCTCCATGCTCTCCTTTAGCCTCTCCTCCTGCTGACTCTCCTTTAGCTGGGAAAACTGAGCAAACTGCTCCCAAGGTGGTAAAGGCTGGCAAACAAGGGAAGCAACAAAAAGCAAAGAATTTTAAACCTGCCGAACAAGAGCAGGTGCCTTCCTCTACTTCCAAGCTTGCTCAAGAGTGTGCAGCTCTGCCAGTTCTTGCTATACCAGAGGTAGCAAAACCAGCAGGTACTGCAGATGCTATCCCTGTCTCTCCCAAAATTGCTGTGGCTCCTGTGGCATTTAAAGTAACTTCCAAAGCTGCTGCCCCAGCACCAAAATCGTTTACAGAAGCTGTTGCTTCTAGTCCACCCAAAGTGTCTGAAGCTGCAAAGGCACCAAGCACTGCTGTTTCAGAAACTAAAACTACTTCACCAAAAGCACCTACTAAGCCGGGCCCAGCCCAGCCAAATGCCCCAGCCACTGCTACTCTTCCAAAGCCTGCTCCTTTGGCAACATTTGAGGACGATGATCTGCCACCTCTCCTTCCACCTGAGAATCCTTTTACAGTGCCTGCTTTCCCCCCCTTGCCACCTACTACTATAACTGTTGAATCTGTCCCTAAAGCAAAAGCAGCTCCTAAAGCTAAGCCAGCTTCTAAAGTTGAACCTGTCCCCACCCCTAAAGGTGCCACCACTCCGGTAGAGAAAGTAGCAATAGCCTCTAAAATTGAGGCTGCACCAAAAGTTGAGCCCTTCCAAATCACTAAACCTCAGGCTCCCACTAAAAATGAGGCTGCTGCACCTAAAGTTAAGTCTGCTTCAGCTCCTAAACCTGAGCCCGTTCCTGCCCCTAAACCTGAGGTTCCAACTAAGAAAGAGGTTGCTGCTGCTGCACCTCAAGCTAAGGCTGCCCCAAGTCCAAAAGCGGAGCCTGTTTCTGCCCTTAAACCTGAGGCTCCTGCTAAGAAAGAGGCTGCTGCACCTAAAGCTAAGCCTGTCCCAGCTTCTAAAGCTGAGCCTGTTTCTGCCCCCAAACCTGAGGCTCCCGTTAAGATTGAGGCTGCTGCACCTAAAGCTAAGACTGCACCAGCTCCTAAAGCTGAGCCAGTTCCTGCCCCCAAACCTGAGGCTCCCGTTAAGATTGAGGCTGCTGCACCTAAAGCTAAGACTGCACCAGCTCCTAAAGCTGAGCCAGTTCCTGCCCCCAAACCTGAGGCTCCCGTTAAGATTGAGGCTGCTGCACCTAAAGCTAAGGCTGCACCTGCTCCTAAAGCTGAGCCGGTTCTTGCCCCCAAACCTGAAGCTCCCGTTAAGATTGAGGCTGCTGCACCTAAAGCTAAGGCTGCACCTGCTCCTAAAGCTGAGCCTGTTCCTGCCTCCAAACCTGAGGCTCCAGTTAAGAGCGAGTCTGCTGCACTCAAACCCAAGGCTGCTCCAGCTTCCAAAGCTGAGCTTGTTTCTGCCCCCAAACCTGAGGCTCCAGTTAAGAATGAAGCTGCTGCACCTAAAATTAAGGCTGCACCAGCTCCTAAGGCTGAGGTGGCTGTTAAGACTGAGGCTGCTGCTGCCGCCCCTAAAGCCAAGGCTGCCCCAAGCCCTAAAGCtgaggctgctgctgctgctgcacctaAAGCAAAGTCTGTCTCTAGCCCCAAACCTGAGCCTGTTTTTGCCCCTAATGTTGAGACTTTTGCATCTAAAGTTAAATCTACCCCTGGCCCTAAAGAGAAGGCTGCTCTTGCCCCTAAAATTGATGCTGCTGCTGCGGTTATCAAATCTGAGCCTGTTTCTGCCCCTCTAATTGAGGCTGCTCCTACACCTAAAGTCAAGTCTAGTTCTAAAGATAAGCCTGCTCCTGCCCCTAAAGTGGAGGCTGCTCATGTCCTGAAACCTGAGTCTGTTCCTGCCTCTAAGATTGATGCTGCTCCTGCCTCTAAAGTTAAGACTGTTGCTGGTCCTAAAGCTGAGACGGTGACTTCTACTAAAGTTGAGGCTTCTAAAACTGAAGCTACCCCTAAAGTTGAAACCACTGCTccaaaagctgaaaaaaatgttcCTAAATCTAAGGCTGCTCCTGCCACTAAAGTTGAGGCTGCTCCAGCACCTAAAGTTGAGGCTGCTTCTGCCCCTAAAGTCAGGCCTCCACCTAAAGTTGAGCAATCCCCTACCAGTAAAGCTGAGCCTGTCCCTGCTGCTAAAATTGACAAAGCCCCTGTTCCCAAACCAGTAAAAGTCTCATCCATACTGGAGCCAGTCATCAAGAACGACACGGGGTCTGGAACCGAATCTGACAGTGATGAATCTGTTCCTGACCTGGAGGAGGGAGACTctgcacagacacaaacacagcagGCACAGCTTGCAGCTGCAGCCGAAATCGATGAGGAACCTGttagcaaagcaaaacaaagcagaaGTGAGAAAAAAGCTCGCAAGGCTATGTCCAAACTGGGGTTGAGACAAGTTGCCGGTGTTACCAGGGTAACCATTCGCAAATCCAAGAACATTCTCTTTGTCATCACC

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0030239 myofibril assembly biological_process
GO:0015031 protein transport biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko04928 Parathyroid hormone synthesis, secretion and action

ZFIN:

id description
ZDB-GENE-020423-4 Predicted to enable unfolded protein binding activity. Acts upstream of or within definitive hemopoiesis and myofibril assembly. Located in cytoplasm and nucleus. Is expressed in cardiac muscle; hematopoietic system; skeletal muscle; and somite. Orthologous to several human genes including NACA (nascent polypeptide associated complex subunit alpha) and NACA2 (nascent polypeptide associated complex subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000140302

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042847 lncRNA upstream 23320 17839340 ~ 17842760 (+) True XLOC_021586
TCONS_00042842 lncRNA upstream 83036 17782508 ~ 17783044 (+) True XLOC_021583
TCONS_00044808 lncRNA upstream 89735 17770424 ~ 17776345 (+) True XLOC_021582
TCONS_00042841 lncRNA upstream 206978 17656836 ~ 17659102 (+) True XLOC_021581
TCONS_00044807 lncRNA upstream 315427 17547112 ~ 17550653 (+) True XLOC_021580
TCONS_00042860 lncRNA downstream 56754 17930109 ~ 17932506 (+) True XLOC_021591
TCONS_00042866 lncRNA downstream 256505 18129860 ~ 18132323 (+) True XLOC_021595
TCONS_00044669 lncRNA downstream 261111 18134466 ~ 18135497 (+) False XLOC_021597
TCONS_00044809 lncRNA downstream 261207 18134562 ~ 18136294 (+) False XLOC_021597
TCONS_00044810 lncRNA downstream 261404 18134759 ~ 18136294 (+) False XLOC_021597
TCONS_00042846 mRNA upstream 17173 17839187 ~ 17848907 (+) False XLOC_021586
TCONS_00042844 mRNA upstream 50827 17800717 ~ 17815253 (+) False XLOC_021585
TCONS_00042845 mRNA upstream 51302 17800839 ~ 17814778 (+) True XLOC_021585
TCONS_00042839 mRNA upstream 316935 17522867 ~ 17549145 (+) False XLOC_021580
TCONS_00042838 mRNA upstream 342696 17512037 ~ 17523384 (+) False XLOC_021580
TCONS_00042855 mRNA downstream 5614 17878969 ~ 17881327 (+) False XLOC_021589
TCONS_00042856 mRNA downstream 5651 17879006 ~ 17881328 (+) False XLOC_021589
TCONS_00042857 mRNA downstream 5689 17879044 ~ 17881327 (+) True XLOC_021589
TCONS_00042858 mRNA downstream 25871 17899226 ~ 17907404 (+) True XLOC_021590
TCONS_00042859 mRNA downstream 52924 17926279 ~ 17933143 (+) False XLOC_021591
TCONS_00042843 other upstream 82539 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042836 other upstream 364652 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042829 other upstream 654274 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042828 other upstream 654806 17146561 ~ 17211274 (+) False XLOC_021571
TCONS_00042827 other upstream 719089 17146315 ~ 17146991 (+) False XLOC_021571
TCONS_00042853 other downstream 171 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042854 other downstream 717 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042869 other downstream 415719 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042875 other downstream 815002 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042879 other downstream 857967 18731322 ~ 18731399 (+) True XLOC_021602

Expression Profile

//