RNA id: TU1351544


Basic Information

Item Value
RNA id TU1351544
length 3512
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1185128
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51003491 ~ 51007735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagttgactgatgagaccagacagtcagaatgacaggcagagttGACTGATGAGACCAGAATGTCAGAATGTAGCGTTGCCGTATTAAAGCGTTTCCAGAGAGAAACCATCCATCAAACCAGAGATGTATTCATGAGGTTCCTTCCCCCTAAAGTCTGTCCCAACCTTAAAAATCTGAGACTTTTGCCATTCtctttatttatgtatttttctaATGCTTTATTTATCtctatatttatttatgtatttggaatatttatttctatgTTCATTTATTCATgctttattttgtttttttcaaGATCTCTGTACATAGCTGAGCTGTGCGATGCGAATGCTGAAGTAAGCCCATTTAAATGTGCAGTACATTTAGGCAAGTAGATGGTTTCTCCAGCGTCCACTTCAGGGTGACATTTGGTTAGGGCCTGGGTGTCCCACTTCTTCCTAAAGAGTCCTAAAGGGCACATTGAGTTTAGTTGTGGATCTTAGGGGAGAAAGGGAAGGATTGAGAGCCATTTCCATTTCTTCTTGGTAGAAGAATCTCTCTTAGTTCAGACTCAGATAGGAGGCCCAGGTGTTCTACAGGAGGCATGTGTGCAATACTCTGCTGGTGTGTCTGACTTGGTTTAACATTGGAAACGGCCTGGTAGGGTAGTGTTACTATATGCCTACCACTGGACCgctgtgtatgtctgtgtttaCAGAAGGATCTGATAATTATGCACATTTTCTTTTGCTTGTTACTGGAAATATTAATTCAACATTGGCCTTGCAGCTCATAGTTAATTCAATAGGAGCATTGACCGGTCAGCAATGGACAATTGAATGTATGTTGACTAGAAGGAATAAAGAAAGTGAATTAATTGCCTACACTGACCGCCATCATTATCATCACATCACCACCTACACCTTTATTGATGTGATCTTCAAAGTTGACCTTTAGCTGGTAACCTCACAGGGACAGACACTGTGCACGGACAGACTCACCAGGAGGGGAAGAACCTTCATCACCATCTCCTGtgtaggctctctctctctcccctcacctctctctctctctctctctctctctcttccctcacctctctctctctcttctctctctctctcttccctcacctctctcactccatcccatCTGAATCCACCAGTGAGCTCCCTTTTAGCCCAGCATTAATCCCAGAGTTTTGTTTGGAGTTCATTTGTTTGTCTTAAGCTTTGTTTAAACCAGATTGATATCTCAATAAACAGTGGAGCCGTACTGTATTGTGGTAATGCTAGTGATTATACAGCAGAAAGCACTGTAGGACCCAGAGACCTGCTCAATGGGAGTTTCACCCCCATCTAAATCCCTATGTTACCTCTGATTAGGATAATAACACTGGCTAATCATTTACTGTGCTGAGACCACAGAGGGagagacctctctctctcacttccatcCCACTACTCCCTGTCCGTGCATCTAGCCCCTACCTCCATGTGTGCAGGCAGGTGGATTGAAGGTTCTTATAGGATAGAGTTGGAGTCAGTCTGTCCCTTAAGTCTGCGGCCCCTGCAGCTCTACCCCAGTAGAACAGTCATCTCTCAGTGTTTCAATAGACAGCGGAGGACACTGTGATCTGACAGTAACGTTGCCCTGCTGCTGACCTTCTCAGATGGACTGTTTCTCTCCCAGGTCTGTGATGCCCATATCCTGTGACCTCTGCGTTAGTGTGAAAACATGTCAGTGGTTCCTCTGCAgcggagtggaggagaggagaggaggagcactgGGTCAGGTAGTCTATCCCCAGGGAACTGCCATAAAGGGAGCGGTGTCAGGACATGTGATGTCACAGTTAGCcagggacagagtgtgtgtggggggatgaGTGTCAGTGTGCCTGTGTGTTCGTGCAAGGTTATACAGGAAGCAGAGATAAGGATGTGACGTATTGTTCTAGATGCCTTACTGTTGCTGTGGTGAGGAGTCAGGAGGTTCCAGTTCATCAACTAACCAGGCGCATTAGATCAACTCCACTGGCCTCACAAACCCATTGTAACAGTAACACAGAGGTCTCTGTCTGTGTAGTGAAATTATTGAGATATAATAGGAATCAACTGCCACATCTACTGGACAAGGGAGATTTTCAGAGTGATAAGGAATGCAGCAGGCTTTCCTATATGAAATTAGTACTATTTTGTTATTGGTCTCTTGTTACGTGTCcacatgactatatacagtacatatatcaTAGTTTTAAGAATATGTGGGAGTATGATTACACAAATGCAGTGACAAGGATTGTGCTGTTTATTTTTGTGTTGGGTAACTGTCCGTCCATGGAGCTGAGTTATGGCTCAAAGCGGCGGCCATCTTTTATACACAGGGTGGGACTACAACAGATGGATTTCTGGGTAGGGTAGGCTGGGTACTCTACACCCGGAACCTCTGGTCCAAAATcaaaagacaacacacacacacatactacacgcATAGTAACACACATACATGTCCAGTCAGGTTAGGTAGTTTAAACTACTGTGTACAGTGAAGTGGCGCTAGAGATCATAAAAGATCATAAGGGATTTACCGTTTACATGTTTAAAGTCGATCCACGTAACCGTAGGAGCTAGGAGCAGGCTGACGTTGACCTATTCATTTTTGTAGGCATGTTTTTCTATTTCTGAATACACATCCCAGTACTCTGGCTCCTCTGACTGTGTGACTCTGATCTGAACTGTGTCTGAAACTCTGCATGTGTGGATGACTAACGCTATGGGACACTGATGAACCATCTCTGTGGTGAGCAGCTCCATGGGACACACATACTCCCCACGAGGCTGACTGGTCACTGTAGGCTAGAGATGCTGGTCTAAGTGGCCAGCCACCTATCGAGGTCTATTGGTGAGTGTTCTGCATGGCTGTAAGTGTACAAGGGCAGGGTCTGGGAAATGTGCATGAGATGTTctgggctctatacagtaggagGGTCTGTGATGCTGTTAGTTGCAGGTCAGTATGTTCATTGGTCAGACCCAGCCAGACAGTATTAGACATTAGGAATGACCAGACAGGTAGACAGTCTAAGGCAGAGAAGTGTTGGTAAGAGATGAGTGACGACTGGTAGAACTATTGCTGGGTGTATGGATGGAAGGGCTCAGTTTGGGAGGTTCATCATCAGTAGGACCTTTGAGGACGGAGTACTGATCGTGTGCCATTGGGGTGATGATAATGTGTACATCTCCATTTAGAGTACTTCTCTTAGATTTTACTATGATGGGTTTTTCTCCATTCATTTATTCTGTACTTCTGAATCCTTTCTAAAGAGAGGTTGATGTAAAACCTTGATTCAGTTTTGTTCTTTTTTTATTTGAGGACTGATGTGTGATTCTTTTCTCACGTCATTGCTTTGacagctgtctgtctatctgggcCAAAGGGGGTGGTGGTTTTCTGTGAGCGTTTGCGTCATCGCAGGTCAGCGCGACCCTGTATCAGCACATATTAATAAAAAACTATTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351573 lncRNA downstream 11864 50990373 ~ 50991627 (-) True G1185154
TU1351531 lncRNA downstream 66907 50936358 ~ 50936584 (-) True G1185123
TU1351420 lncRNA downstream 179425 50789601 ~ 50824066 (-) True LOC110485208
TU1351449 lncRNA downstream 216691 50785477 ~ 50786800 (-) True G1185048
TU1351413 lncRNA downstream 294364 50708892 ~ 50709127 (-) True G1185012
TU1351614 lncRNA upstream 56388 51064123 ~ 51082403 (-) True G1185194
TU1351684 lncRNA upstream 165313 51173048 ~ 51173497 (-) True G1185256
TU1351688 lncRNA upstream 173071 51180806 ~ 51185965 (-) True G1185260
TU1351689 lncRNA upstream 173723 51181458 ~ 51188001 (-) True G1185261
TU1351730 lncRNA upstream 236088 51243823 ~ 51244071 (-) True G1185300
XM_036941431.1 mRNA downstream 119797 50876515 ~ 50883694 (-) True LOC110486730
XR_005035584.1 mRNA downstream 134747 50867328 ~ 50868744 (-) True LOC118938315
XM_021558541.2 mRNA downstream 170783 50827395 ~ 50832708 (-) True LOC110486728
XM_036941419.1 mRNA downstream 179058 50732097 ~ 50824433 (-) False LOC110485208
XM_036941436.1 mRNA upstream 2884 51010619 ~ 51062287 (-) False LOC110485210
XM_036941435.1 mRNA upstream 2884 51010619 ~ 51096139 (-) False LOC110485210
XM_036941434.1 mRNA upstream 2884 51010619 ~ 51230197 (-) True LOC110485210
XM_021558557.2 mRNA upstream 317171 51324906 ~ 51328763 (-) False LOC110486734
XM_036941437.1 mRNA upstream 317171 51324906 ~ 51328763 (-) False LOC110486734
TU1351447 other downstream 221633 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 245447 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 374952 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 1167159 49835663 ~ 49836332 (-) True LOC110486698
TU1349952 other downstream 1315035 49685338 ~ 49688456 (-) True G1183706
TU1352616 other upstream 314065 51321800 ~ 51323931 (-) True G1186080
TU1352611 other upstream 344574 51352309 ~ 51373954 (-) True G1186075
TU1352690 other upstream 482042 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 917228 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 1002955 52010690 ~ 52011211 (-) True G1186216

Expression Profile