RNA id: TU1350790


Basic Information

Item Value
RNA id TU1350790
length 4018
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G1184443
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51003517 ~ 51007979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGATACAGGGTCGCGCTGACCTGCGATGACGCAAACGCTCACAGAAAACCACCACCCCCTTTGgcccagatagacagacagctgtCAAAGCAATGACGTGAGAAAAGAATCACACATCAGTCCTCAAATAAAAAAAGAACAAAACTGAATCAAGGTTTTACATCAACCTCTCTTTAGAAAGGATTCAGAAGTACAGAATAAATGAATGGAGAAAAACCCATCATAGTAAAATCTAAGAGAAGTACTCTAAATGGAGATGTACACATTATCATCACCCCAATGGCACACGATCAGTACTCCGTCCTCAAAGGTCCTACTGATGATGAACCTCCCAAACTGAGCCCTTCCATCCATACACCCAGCAATAGTTCTACCAGTCGTCACTCATCTCTTACCAACACTTCTCTGCCTTAGACTGTCTACCTGTCTGGTCATTCCTAATGTCTAATACTGTCTGGCTGGGTCTGACCAATGAACATACTGACCTGCAACTAACAGCATCACAGACCctcctactgtatagagcccagAACATCTCATGCACATTTCCCAGACCCTGCCCTTGTACACTTACAGCCATGCAGAACACTCACCAATAGACCTCGATAGGTGGCTGGCCACTTAGACCAGCATCTCTAGCCTACAGTGACCAGTCAGCCTCGTGGGGAGTATGTGTGTCCCATGGAGCTGCTCACCACAGAGATGGTTCATCAGTGTCCCATAGCGTTAGTCATCCACACATGCAGAGTTTCAGACACAGTTCAGATCAGAGTCACACAGTCAGAGGAGCCAGAGTACTGGGATGTGTATTCAGAAATAGAAAAACATGCCTACAAAAATGAATAGGTCAACGTCAGCCTGCTCCTAGCTCCTACGGTTACGTGGATCGACTTTAAACATGTAAACGGTAAATCCCTTATGATCTTTTATGATCTCTAGCGCCACTTCACTGTACACAGTAGTTTAAACTACCTAACCTGACTGGACATGTATGTGTGTTACTATgcgtgtagtatgtgtgtgtgtgttgtcttttgATTTTGGACCAGAGGTTCCGGGTGTAGAGTACCCAGCCTACCCTACCCAGAAATCCATCTGTTGTAGTCCCACCCTGTGTATAAAAGATGGCCGCCGCTTTGAGCCATAACTCAGCTCCATGGACGGACAGTTACCCAACACAAAAATAAACAGCACAATCCTTGTCACTGCATTTGTGTAATCATACTCCCACATATTCTTAAAACTAtgatatatgtactgtatatagtcatgtgGACACGTAACAAGAGACCAATAACAAAATAGTACTAATTTCATATAGGAAAGCCTGCTGCATTCCTTATCACTCTGAAAATCTCCCTTGTCCAGTAGATGTGGCAGTTGATTCCTATTATATCTCAATAATTTCACTACACAGACAGAGACCTCTGTGTTACTGTTACAATGGGTTTGTGAGGCCAGTGGAGTTGATCTAATGCGCCTGGTTAGTTGATGAACTGGAACCTCCTGACTCCTCACCACAGCAACAGTAAGGCATCTAGAACAATACGTCACATCCTTATCTCTGCTTCCTGTATAACCTTGCACGAACACACAGGCACACTGACACtcatccccccacacacactctgtccctgGCTAACTGTGACATCACATGTCCTGACACCGCTCCCTTTATGGCAGTTCCCTGGGGATAGACTACCTGACCcagtgctcctcctctcctctcctccactccgcTGCAGAGGAACCACTGACATGTTTTCACACTAACGCAGAGGTCACAGGATATGGGCATCACAGACCTGGGAGAGAAACAGTCCATCTGAGAAGGTCAGCAGCAGGGCAACGTTACTGTCAGATCACAGTGTCCTCCGCTGTCTATTGAAACACTGAGAGATGACTGTTCTACTGGGGTAGAGCTGCAGGGGCCGCAGACTTAAGGGACAGACTGACTCCAACTCTATCCTATAAGAACCTTCAATCCACCTGCCTGCACACATGGAGGTAGGGGCTAGATGCACGGACAGGGAGTAGTGGgatggaagtgagagagagaggtctctCCCTCTGTGGTCTCAGCACAGTAAATGATTAGCCAGTGTTATTATCCTAATCAGAGGTAACATAGGGATTTAGATGGGGGTGAAACTCCCATTGAGCAGGTCTCTGGGTCCTACAGTGCTTTCTGCTGTATAATCACTAGCATTACCACAATACAGTACGGCTCCACTGTTTATTGAGATATCAATCTGGTTTAAACAAAGCTTAAGACAAACAAATGAACTCCAAACAAAACTCTGGGATTAATGCTGGGCTAAAAGGGAGCTCACTGGTGGATTCAGatgggatggagtgagagaggtgagggaagagagagagagagaagagagagagagaggtgagggaagagagagagagagagagagagaggtgagggaagagagagagagagagaggtgagggaagagagagagagagagagagaggtgagggaagagagagagagagagagaggtgagggaagagagagagagagagaggtgagggaagagagagagaaaggtgagggaagagagagagagagaggtgagggaagaaagagagagagagagagagagaggtgagggaagagagagagagcgaggtgagggaagagagagagagcgagagaggtgagggaagagagagagagagagagagagagagagagagagagagagaggtgaggggagagagagagagcctacaCAGGAGATGGTGATGAAGGTTCTTCCCCTCCTGGTGAGTCTGTCCGTGCACAGTGTCTGTCCCTGTGAGGTTACCAGCTAAAGGTCAACTTTGAAGATCACATCAATAAAGGTGTAGGTGGTGATGTGATGATAATGATGGCGGTCAGTGTAGGCAATTAATTCACTTTCTTTATTCCTTCTAGTCAACATACATTCAATTGTCCATTGCTGACCGGTCAATGCTCCTATTGAATTAACTATGAGCTGCAAGGCCAATGTTGAATTAATATTTCCAGTAACAAGCAAAAGAAAATGTGCATAATTATCAGATCCTTCTGtaaacacagacatacacagcGGTCCAGTGGTAGGCATATAGTAACACTACCCTACCAGGCCGTTTCCAATGTTAAACCAAGTCAGACACACCAGCAGAGTATTGCACACATGCCTCCTGTAGAACACCTGGGCCTCCTATCTGAGTCTGAACTAAGAGAGATTCTTCTACCAAGAAGAAATGGAAATGGCTCTCAATCCTTCCCTTTCTCCCCTAAGATCCACAACTAAACTCAATGTGCCCTTTAGGACTCTTTAGGAAGAAGTGGGACACCCAGGCCCTAACCAAATGTCACCCTGAAGTGGACGCTGGAGAAACCATCTACTTGCCTAAATGTACTGCACATTTAAATGGGCTTACTTCAGCATTCGCATCGCACAGCTCAGCTATGTACAGAGATCttgaaaaaaacaaaataaagcATGAATAAATGAAcatagaaataaatattccaaatacataaataaatatagaGATAAATAAAGCATtagaaaaatacataaataaagaGAATGGCAAAAGTCTCAGATTTTTAAGGTTGGGACAGACTTTAGGGGGAAGGAACCTCATGAATACATCTCTGGTTTGATGGATGGTTTCTCTCTGGAAACGCTTTAATACGGCAACGCTACATTCTGACATTCTGGTCTCATCAGTCaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcattctgactgtCTGGTCCCATCAGTCaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcattctgactgtctggtctcatcagtcaactctgcctgtcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1350778 lncRNA upstream 57382 50944921 ~ 50946135 (+) True G1184441
TU1350764 lncRNA upstream 77506 50925791 ~ 50926011 (+) True G1184427
TU1350687 lncRNA upstream 216405 50782955 ~ 50787112 (+) True G1184367
TU1350938 lncRNA downstream 202430 51210409 ~ 51210919 (+) True G1184575
TU1351713 lncRNA downstream 222489 51230468 ~ 51230739 (+) True G1185283
TU1351715 lncRNA downstream 224023 51232002 ~ 51232438 (+) True G1185285
TU1351719 lncRNA downstream 229638 51237617 ~ 51237825 (+) True G1185289
TU1351728 lncRNA downstream 235449 51243428 ~ 51243716 (+) True G1185298
XR_002468101.2 mRNA upstream 10675 50991494 ~ 50992842 (+) True LOC110486733
XM_036941432.1 mRNA upstream 38300 50939574 ~ 50965217 (+) True LOC110485209
XM_021558543.2 mRNA upstream 109038 50885729 ~ 50894479 (+) True LOC110486729
XM_036941426.1 mRNA upstream 128671 50832856 ~ 50874846 (+) False dnm2a
XM_036941440.1 mRNA downstream 336399 51344378 ~ 51373991 (+) False LOC110486735
XM_021558558.2 mRNA downstream 344219 51352198 ~ 51373991 (+) False LOC110486735
XM_021559466.2 mRNA downstream 383881 51391860 ~ 51394113 (+) False LOC110487554
XM_036941443.1 mRNA downstream 386457 51394436 ~ 51402528 (+) False LOC110486737
XM_036941441.1 mRNA downstream 386459 51394438 ~ 51404580 (+) False LOC110486737
TU1350772 other upstream 16951 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1120082 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1168503 49832221 ~ 49835014 (+) True G1183819
TU1348832 other upstream 1418955 49580326 ~ 49584562 (+) True ndua4
TU1348816 other upstream 1580755 49419570 ~ 49422762 (+) True G1182742
TU1351847 other downstream 376193 51384172 ~ 51392082 (+) True LOC110487554
TU1351876 other downstream 437928 51445907 ~ 51446557 (+) True G1185436
TU1351980 other downstream 619703 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 643634 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 685904 51693883 ~ 51695058 (+) True G1185522

Expression Profile