RNA id: TU1352611


Basic Information

Item Value
RNA id TU1352611
length 3652
RNA type TUCP
GC content 0.47
exon number 19
gene id G1186075
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51352309 ~ 51373954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAATAAAGTCTAAAATCAGAGAAGTTACAGTACAGTGGTAAAAGCATGCCATTTCccagtaaaaaaaacaatcatacaAATGATCTTcactaagaaaatatttacaataaTTTTAATTCGTTCTTATTTGACAGGATGCACACCTTACTAGAAACGATGTAGCAGTCATAATCATGATTCTTGTACATTTTTTGGTTgatcttttttttaaattgagataCAATAAAACTATAGACACAGAATATCCATTTCAATCTGACATGATTTCAATTTGACTCTCACAACTCGACCTTTGATGGTTGTTTTAAACaatgatttaaaaataaataaaaccatgATAGCTTATgactattttttaaataaattgttGCTTTCATCTGTTATGTATTTTAAGATCAGAGAAAGTACCTGGATAATGCATAATGTAATAATCCATGATGAGTTGTCCCTGGTTAAACCATGCAGGACTAGTCCACTCTTCTACAGTAGGAGGGGGGTTTCTCATCAGCATTATATAATCCAAAGAATATCAAGGTTGGAAAAAGACACATGAAACTGTCAATAGGAAAATCAGTGTAAAACAATAAATAACGTTACTCTTTGGAGTTTTAGCTTAAAATAATATCGAGGCCAGCACAACGAGAAAGTACAGTAATATTTATAGAATCTTTAAAAAATGTGCACAATACTGCTTAAAGCGAAATATAGTTGtcacaaaaaaaacagacatcAACCATCCCATCAATCTATCCTGGTCCTTTTGTGCTcttttggcaagacagcacaaaccgatctgggaccaggcaagcATTAACTTATGCCTGTCATAAAACCAGGGTGATTATGGTTTTATAAAACTCCCAGGTGTTGCTAGGAGGTCACGAGGTCAGGCATCATGGGGTCATGTCCAGCAACCAGCGCCCAGCCCCCTAGATCTGAGACTCTCCCGTGTTCTGTGCGCTCTTGGATGTCTGTGATTTGCTGTTGCTTGACTGGTTGGAGGAAAACTCTGAGTACTTCGTCTTCTGCAGTGCACAGATGCTGTCCAGGATCTTGCCATACTCCTCTCTCACCTGTTTAGAGAGCAGGCAGTGCATGAGGAACACTAGGACCCCCTGCAGACTGTTGAGGATGGTGAACAGGTACGACATGGCCAGCGTGCTTTCCTCAAACTGGAAACAGCCAAAGATCCACATGGTGCCCAGCACACACAGCTGAGCCACTGCAGTTATGGTGAATGCCTTGAATTTGCGGAGTTTGTCAAGGTCAGGGTTCAGGCTGGAGAACTTCTGGGCCAACTTCCACACTGTGATGAGGAAGAAAAACACATTcacCATGATGATGATACAGACAGGGCCAAAGAAGCTCCAGatgaatccatcctcaaggttgAGCCAgcagTGGCGCTCGGTTCCGTATCCTTTGGCGTTGGCGAGGGCAGAGATGGCGACGATGACAGCAGGAACGCCGTAGCCCCCCGCCATCATGTAGAGGGGCCTTAAGGTGGTGTTGAAGACCAGAACCACCATTCTGAAGAGCTGTACTCCCTCCAGACACATCCAGCAGAACGCCGACAGGAAGAAGAAGTGAAGCAGCCCAGCCACCACCGCACAACCAGCCTGGCTCTCGGTGCGTGAGATGCCGACGAGGAAGATCAGGTTGGCGATGAAGAGGCTGAGGCAGAGGTGGAGGTGGATGGTATTGCGGGTGCTCCGGATGGAGCGgatcagggagaaggtgaggatgCAGATGAAGAGAcacagcagggacagggacaggcccACCCAGGTGATCAGCTGCAGCTGGAATGtgtcCTTGAACTCATAGAGAGCCATAAGAACAGCAAAACTGCTGAGATGGTAGCAGGAGCACACAGTGTGGGTGGCATTGGACTGCACCAGGAAACAGCCTCGATCAGACCAGGTCCCTTCTCCCAACTCATCCCAGTACACACAGGTGTAGTTCCCTTCATCTGTCTCCTTCAAATGGGAGAAGGTGAATGTGACTGGCTCCTTGAGAAAGGATGTGTCCTTGTTACTCATGGTGGCCGTCACCACTTTGGAGTTGATCTGAAAGCTGTGGCCCTCCTGTGCCTGCAGCCCTGAGAAGGAATGGTTGGTGGATGTCTCCAGACCCTTATAGCTGAGCAGGGACACTGTTGCAAATCCTGGGTAGGAGGTGTCTCCAGCAGCAGTCTCCCAGTGGCTGTCTAGCTGAGCGTGTGTAGATGACAAGGTGAGGGGCCCCTGGGGTGAGGAGGCATTTCTCTGCACCAACAGCTCCACCTCGGTGTGAGTTTTGAACCTCCTGGTCTCGGGATGTTTCAGCAGAGGTCCTATAATTCTCAGAGCAGTCTCTACCAGGTCCAGCAAGACACTCACTTCCTTGTTATTTTTCAGAGGCCCGCCAGACAGGAGCCTGTCTATAGCAGACAACAGAgtCTCTAGCAGGGCCTCTCCATCGACTTGTTCTGCCGTATTACTCTCCCTCAACTCCAGACAACTGGTCCTCATCAGGGCCACAGCATCCTGCAGACCTGGGATGACCATCTGCTTCTCGCTCGCAAACATATCACAGTTCAACTCAGTACATCTCCCCTGCGGGTCTCCGTAGTTGGTGAATCCTGCATGGCACGCACACCGATGGCCACCGTTGGTGGCATTATGGCACGTTCCATTCCCTCCACAGATAAACTTATTTATTTTACACAAGTCTTTAGCACCTTGAGCATCCTCACTGTCTGTGGTTGCTGTCTGGTCTGTGGTGGCTTTCTGATCTGTTATTTCCTCACACGATTCTCTATTCCCTGTGAATTGAGCGTTGCCAGACTTCAGGCCAAACCCTGGATTGCAGACACAGGAGTAGTTGCCTGGTGTGTTGACGCACTGTGTATGCTTCCCGCAAATTGTGATGTCGTCCTCACACTCGTTTCTATCTTCACATGTGACTCCTTGGCCAAATATAAATATTTCCACTCCAGTACTGGAGACAAACCCCTCATTGCAGATGCAGGAGTAGGACCCTAATGTATTGTGACACTCGGCATTGGGACCACAGATGTCCTTATTCTCCAAACACTCGTTGATGTCTAGACATTTTTCAGGTGAGTCAGCTGTGAAGTTCATCCACTGTGATGATGATCTGAACCCAGGAGCACATTGACAGTAGAAGCTTCCATTGGTGTTGATGCATGCTGCATTCTTACCACAGATATGTGGTGTTTCAGTGTCATAGTTATAGTCATCACTAGGAGGATTACACTCATTCTCATCAATGCAATGTTTCCCATTTGTAGAGAATCCTTTAGGACAGCCTGATACATGTTCCATCAGCAGGGCAAGGTGAAGAGCCAGAATCAGGAGATGCAGTCTGCCTGTCATGGTGAAGAAGAATCTCACTATCTCTATGAGAATCACAACGCACAAGATTAGACCAGGGCTGAAACTCTGCCCCTATCTGAACGGTCTATTCAAAAGTGTGATAAAGATCCGTCTTCTCTTCTTCTCAGGAGTTTCTCCAAACTTCTCAGGGTTGTTTTACTGAAGAAAAATGGCACCCGTATCCATCAACTCAGTCAAGCTTCTGTCTAGTAGATTGAGctctgctgacatcaccaaatGAGAGAGAAAATGACAAGTAGTCACTGTGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351799 lncRNA downstream 33710 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 56786 51295271 ~ 51295523 (-) True G1185355
TU1351783 lncRNA downstream 59502 51292541 ~ 51292807 (-) True G1185353
TU1351778 lncRNA downstream 61935 51289769 ~ 51290374 (-) True G1185348
TU1351740 lncRNA downstream 96563 51255513 ~ 51255746 (-) True G1185310
TU1352649 lncRNA upstream 3503 51377457 ~ 51378219 (-) True G1186113
TU1352686 lncRNA upstream 110336 51484290 ~ 51484518 (-) True G1186150
TU1352689 lncRNA upstream 113547 51487501 ~ 51487704 (-) True G1186153
TU1352615 lncRNA upstream 129221 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 159337 51533291 ~ 51533538 (-) True G1186175
XM_036941439.1 mRNA downstream 22993 51324906 ~ 51329316 (-) True LOC110486734
XM_021558556.2 mRNA downstream 23456 51324906 ~ 51328853 (-) False LOC110486734
XM_021558555.2 mRNA downstream 23468 51324906 ~ 51328841 (-) False LOC110486734
XM_021558557.2 mRNA downstream 23546 51324906 ~ 51328763 (-) False LOC110486734
XM_036941437.1 mRNA downstream 23546 51324906 ~ 51328763 (-) False LOC110486734
XM_021558560.2 mRNA upstream 31303 51405257 ~ 51411271 (-) False LOC110486738
XM_036941444.1 mRNA upstream 31303 51405257 ~ 51412417 (-) True LOC110486738
XM_021558563.2 mRNA upstream 48636 51422590 ~ 51424573 (-) True LOC110486740
XM_021558564.2 mRNA upstream 53731 51427685 ~ 51441706 (-) True LOC110486741
XM_021558569.2 mRNA upstream 68933 51442887 ~ 51458885 (-) False LOC110486742
TU1352616 other downstream 28378 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 570451 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 594265 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 723770 50626647 ~ 50628539 (-) True G1184986
TU1350091 other downstream 1515977 49835663 ~ 49836332 (-) True LOC110486698
TU1352690 other upstream 115823 51489777 ~ 51490241 (-) True G1186154
TU1352963 other upstream 551009 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 636736 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 651964 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1285377 52659331 ~ 52659809 (-) True G1186670

Expression Profile