RNA id: TU1351891


Basic Information

Item Value
RNA id TU1351891
length 2600
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1185451
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51465343 ~ 51468001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCGGAATTACAGTATCTGCACCTGTAAGAGTATGTACATCTTATTGACATATAATGCAGATATACAGTCAGAGATGCACAGGCATCACCTCATGCAATAAAACCCTGAAATGATGTATTTATTTGTAGATATACCAATTTGGGCCAACCCAATCCGCCACATTCACCAGACAAGGTAAATAGCGATTTCCTTGAAAATAAAAGTGCCATACAAGCAACCATGGCATGGCAATGCATTTCTGTAGACAATAACTACAGTTTTGTATCATTGTCTACACATACACAATATATCATTTTAGAAATAATACTGATCATAATACTTGCAGAGTATATGTAACGCAGAGTTAGTCCTCTTGGCACTGCAGCTACAGTAGTGTACATGCCCAGCATGGGAGTTGCTGGTTTCATACCAGACAGAACCAACAACCCCCTGATTTCTATACAATATAGTAGACCTCAAAATATcaagaaatgaaaaaaataaaatgtgcatTCGCTAGTTTCCCATTTTTTACTTCTTGATACAATCTACGCCCGCATCGATGTCTGTTATGAAGACGACGATTAGATAGTGAATATTATTACTTAGAATAAAAAGGCAGGTAGGGGGTGGTAGCAGCTATATTCAAAACATATATCCAGCAAATATTTTATATGTTTGTAGAGGAAGTAAATATAATATAGATTCAGGAAGATAAGTAAACACAAACTTGTGAACGGAGCAGCAGCCTTAATCACTGCAAGAGCTCCAGAGAACATTAACAATGACAGACTATCTGTCATTAAGCAATTATAACTCATGCAATAAAAACAGAGTGAAGGCTAATTTTACTTAATGGCTGTTCGTAAAGtgcagagagagaacaaatggaTGTTACTGAACAGGAATGACTGTCGACGAGTCAGTGAACGGAAAGGGTTTTCCACCAGTAGCCTTtataaatggcatatattatcaTATTATAAAGAAGAGGGTTAGACTGTACAGTTGTGTAAAGGGTGTTAATAAGTATAATTATTATGAAAGACAGAGCAGTCTAAAGAGCAGTCTAAAGACATAAAATACAGTTTGAgtctgttttttaaaatatacTAGCATGCACTAATCATGCTCTACGATGACATTCTGCAAATTCAAGGCATCCCAACACTAAGAAGCATTCAAGCAAGCATTCAAAGTATTTTGAAAGAAAATATGATCTTAAAATACTCCATGAAGCAAGCATTCACAACCATAGCTTGCAATGTTaacaatgtatatatttttttacaatattaCATTTGTTTACTATGGAGGTTACGCTCAGTTCATTTCTTATCTACAATACAGGAGTTGCTTTCAGTACTTTTCAATTAAATGCATCACTCATCTGTCTACAGTTATCTCTTAATAACTTCTCTCATCTACCCTTTTCCCCTTTCTATTTCATTTCAAGGAACTACTATCTAAAACTCCTCCCTTTCACGCATTTCCCATCCTGTTAAAAAGTGATAAAAGTCTGGCCAAAGAGCCAGCAAGGATATAAAGGCTTAGGAAATATATTTAAAATTGAATCACCAGTTAGTTAGGCAAATAGATGGCTTTCAATAGTCATGATGGACATGACGGTGGAAATCTCATCAGGGAAAGCAAGTCATTGGTTTCCAAATGACAAATAACACGTGTGACATATGAATCAATATGAATCTATGCCAGCAGCAATGTCTGATAGAATCTATGTAATGGTCTTTGCTCATCAGTATGTAACAACACTTAAGCAGCTTATTCAATTTACTGCTCTAATTTAAACCTATTGACATCCATCAGAGAGACCATTACTGTATCCCAATACAACGAGGGCAGAGTATGGGTAGAATGTTTTTATTAATCACATAACTTACCATAGAATTAAAGGTAACTACTTTCTCATTCTAAACCTAAATTAAACTACAGTAAAAGTTAATTGTACCTGGGCTATGaaattataatgatgatgatgtgcaTTTCATGGAATTACATGTAGAATCCCATAAAACTGGTTACTATTCATATAATTCTAGAACCAATTAAGATCTCTGTGGAGCATTCATCCAGCCTATACAGTAATTGGTTTCCCCAATGTTTGCATTAGGGTGTCATGGAAAGGTTTGCGGCACTGTCAGATACCTTCTGGACAATTCATCCTGCTGCTTTCAGTATACGCTATTATGAGGTCCACACTATAGTGAGGAGTTAGTTAGGAAACAAACTACTGTAGTGCAAAACCtactaaataaatacacaacacaATGGTGTCATAGAGGACAAACATACTTTCTTAATATCCACAACAAATCTGGGTTGGCCAAGCCTCAAACTGAGCCCATTCCTTCAGGTCTGATCTTTATCTAACTACCACACATGATGCAGGAGCCATTCTACACAGAACATGGACTAAGCATGCACTCCAGACTGGGAGATAACCAACAGCACATTCACTTCCACCAAGAGCATGGAATTCCTGATTATGACACAAATGTATTTACTTAGGCAAGaccattaagaacaaattctcatttacaatgacggcctaccccggccaaacccggatgacgctgggccaattgtgcgccgcccaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351824 lncRNA upstream 105620 51352242 ~ 51359723 (+) True LOC110486735
TU1351796 lncRNA upstream 151358 51313766 ~ 51313985 (+) True G1185366
TU1351777 lncRNA upstream 175093 51289810 ~ 51290250 (+) True G1185347
TU1351773 lncRNA upstream 179109 51285958 ~ 51286234 (+) True G1185343
TU1351772 lncRNA upstream 179494 51285630 ~ 51285849 (+) True G1185342
TU1351897 lncRNA downstream 8334 51476335 ~ 51481810 (+) True G1185457
TU1351904 lncRNA downstream 17058 51485059 ~ 51486576 (+) True G1185464
TU1351906 lncRNA downstream 21468 51489469 ~ 51489672 (+) True G1185466
TU1351907 lncRNA downstream 21834 51489835 ~ 51490241 (+) True G1185467
TU1351910 lncRNA downstream 25300 51493301 ~ 51493516 (+) True G1185470
XM_036941441.1 mRNA upstream 60763 51394438 ~ 51404580 (+) False LOC110486737
XM_036941442.1 mRNA upstream 60763 51394440 ~ 51404580 (+) True LOC110486737
XM_036941443.1 mRNA upstream 62815 51394436 ~ 51402528 (+) False LOC110486737
XM_021559466.2 mRNA upstream 71230 51391860 ~ 51394113 (+) False LOC110487554
XM_021558558.2 mRNA upstream 91352 51352198 ~ 51373991 (+) False LOC110486735
XM_021558573.2 mRNA downstream 94363 51562364 ~ 51566331 (+) True LOC110486745
XM_021558577.2 mRNA downstream 118245 51586246 ~ 51590496 (+) True LOC110486751
LOC118938087 mRNA downstream 295580 51763581 ~ 51764616 (+) False LOC118938087
XR_005035589.1 mRNA downstream 315887 51783888 ~ 51822874 (+) False LOC118938318
XM_036941448.1 mRNA downstream 315887 51783888 ~ 51823957 (+) True LOC118938318
TU1351876 other upstream 18786 51445907 ~ 51446557 (+) True G1185436
TU1351847 other upstream 73261 51384172 ~ 51392082 (+) True LOC110487554
TU1350772 other upstream 478777 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1581908 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1630329 49832221 ~ 49835014 (+) True G1183819
TU1351980 other downstream 159681 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 183612 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 225882 51693883 ~ 51695058 (+) True G1185522
TU1351994 other downstream 229875 51697876 ~ 51698646 (+) True G1185535
TU1352079 other downstream 249747 51717748 ~ 51718204 (+) True G1185616

Expression Profile