RNA id: TU1351904


Basic Information

Item Value
RNA id TU1351904
length 1518
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1185464
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51485059 ~ 51486576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAACAAGCTTAAATAAAAACACAATTACAATTTAAGCTTTGTCACAAGATTATCCACATGAACTttaaaggacaacttgtcatccaaccaaatacctaggtatttgtaggatgACACTTTTTCAATGGATAAGCCACCAAATGTGACAATGCTAATGTTCTCTGGCAGAGTTCTAGCTCTGGTAAAGGTCATGAATTTAGTTTTTTGTATATTCAAGACCAGTTTGAGACCATAAAGGGAGGCCTGCAGTGGCTGAAAAGCAGTCTGGAGCTCTTCAACATcctgaaccagagaaggagcacatgaatatataactgtatcatctgcattAGATGTAACTTTGCTGGTTGGAACCCTGGGGCACACCTCTATTAATCTCAAGAAAGCTAGACTTGTGATCGTTGGTATATTCACATTGTGTTTTGTCAGAAAGATAGTTCCTAAACCAATTTACTGCCACTTCACTGAGATCAATGTTTCTGAGTCTATCTAGCAACAATTCATGGTCAACTAAATCAAAGGCCTTTAAGAAATCCACAAACAGATCAGCACAATGTGTCTTTTTATCAAGTCCATTAATGATGTAATTTGCCACTGCCATAGCTGCAGTTGTGATGCTGTGTCCTGATCTAAAGCCAGACTGAACACTGCTCAGTATGTTCTTTTCAATGAAGATGTTTTTTAACTGTGAGTTCACTAGGGATTCATAGACTTTGGCCAGGATAGGGAGTTTAGAGATAGGACCATAGTTTTTAGCATCTGAGGGATCTCCACTCGTTAGCAGTGGGAGGACATAAGCTGATTTCCAAATGCCGGGTATGGAATTGGTCAAGAGACTCAAGTTGAAAATGTGAGCCACAGGTTCAGTAATAATACCAGCTGCTATCTTTAAGAGGTAGGGGTCCAAGTTGTCTGGGCCTGCAGACTTTGTAGTGTCTATTGCCTCTAGTGTTTTATAGACCTCAGTATAAGAAACAGGCTCAAAGTTCAAATGGTTCACATGAGGGCCTATGTCATAGTTGACTGTAACAGAGCTTACATTAGAGGCCTGGGCCCCATCGTTATCAAAAACTGAACCAGCAGATATGAAGTGCTTGTTAAAAAACCCAACAATATGGGCTTTATCCTTCACTTAATTAGAATCCATCATTAAATGGTCAGGAAGGCCAGAGGATACATTAGAACCTGACACTGATTTGATTAGCTTCCAGAACTTGGTAGGGTTGTTTAGGTTCTCTGTGACTGCATTTAGATAGTAATATGATTTGGAATTCCTGATCAATCCTGTGAATTTGTTTCTTAGCACTCTGAAGGAGGCCCAGTCAACAGGAGCACTTGTATGTCTAGCTTGAGCCCAAGAGATGTTTCTCTTTCTAATTAATTCTGCCAAGTTATCTGATAACCAGGGACTGTCCCTTCCACTGATTCTAAACTTCTTCCCAGGGGCATGCTTATCACAAATCTACACAAATGTCATATAAAAATAGTCCCAGGCAGTGTCAACATCGGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351897 lncRNA upstream 3249 51476335 ~ 51481810 (+) True G1185457
TU1351875 lncRNA upstream 13229 51442917 ~ 51471830 (+) True G1185435
TU1351891 lncRNA upstream 17058 51465343 ~ 51468001 (+) True G1185451
TU1351824 lncRNA upstream 125336 51352242 ~ 51359723 (+) True LOC110486735
TU1351796 lncRNA upstream 171074 51313766 ~ 51313985 (+) True G1185366
TU1351906 lncRNA downstream 2893 51489469 ~ 51489672 (+) True G1185466
TU1351907 lncRNA downstream 3259 51489835 ~ 51490241 (+) True G1185467
TU1351910 lncRNA downstream 6725 51493301 ~ 51493516 (+) True G1185470
TU1351929 lncRNA downstream 32752 51519328 ~ 51519548 (+) True G1185486
TU1351930 lncRNA downstream 33253 51519829 ~ 51520150 (+) True G1185487
XM_036941441.1 mRNA upstream 80479 51394438 ~ 51404580 (+) False LOC110486737
XM_036941442.1 mRNA upstream 80479 51394440 ~ 51404580 (+) True LOC110486737
XM_036941443.1 mRNA upstream 82531 51394436 ~ 51402528 (+) False LOC110486737
XM_021559466.2 mRNA upstream 90946 51391860 ~ 51394113 (+) False LOC110487554
XM_021558558.2 mRNA upstream 111068 51352198 ~ 51373991 (+) False LOC110486735
XM_021558573.2 mRNA downstream 75788 51562364 ~ 51566331 (+) True LOC110486745
XM_021558577.2 mRNA downstream 99670 51586246 ~ 51590496 (+) True LOC110486751
LOC118938087 mRNA downstream 277005 51763581 ~ 51764616 (+) False LOC118938087
XR_005035589.1 mRNA downstream 297312 51783888 ~ 51822874 (+) False LOC118938318
XM_036941448.1 mRNA downstream 297312 51783888 ~ 51823957 (+) True LOC118938318
TU1351876 other upstream 38502 51445907 ~ 51446557 (+) True G1185436
TU1351847 other upstream 92977 51384172 ~ 51392082 (+) True LOC110487554
TU1350772 other upstream 498493 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1601624 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1650045 49832221 ~ 49835014 (+) True G1183819
TU1351980 other downstream 141106 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 165037 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 207307 51693883 ~ 51695058 (+) True G1185522
TU1351994 other downstream 211300 51697876 ~ 51698646 (+) True G1185535
TU1352079 other downstream 231172 51717748 ~ 51718204 (+) True G1185616

Expression Profile