RNA id: TU1352690


Basic Information

Item Value
RNA id TU1352690
length 465
RNA type TUCP
GC content 0.49
exon number 1
gene id G1186154
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51489777 ~ 51490241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcatttctatgttttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggttgcactgtttgtttgtgggtgattgtctatgttgatggcttgtttcagcacaggtctcattttgtagcttcacggtcgaatttggtttattgtttttgttactcgtttgtatagtgttcagtctttcttgattaaagatttgccatggacacttaccacgccgcgtattggtcctcagatccatctcgtctctcctcttcagatgaagaggaggacggccgtgacagaatcacccaccaaccaaggaccaagcggcgtggtagaaaacagcgacgacagcagcagcagcagcaacaacagcggccggtatcacaggactcctggacatgggaggagatactgaacggagagggaccctgggcacaggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352689 lncRNA downstream 2073 51487501 ~ 51487704 (-) True G1186153
TU1352686 lncRNA downstream 5259 51484290 ~ 51484518 (-) True G1186150
TU1352649 lncRNA downstream 111558 51377457 ~ 51378219 (-) True G1186113
TU1351799 lncRNA downstream 171178 51318273 ~ 51318599 (-) True G1185369
TU1351785 lncRNA downstream 194254 51295271 ~ 51295523 (-) True G1185355
TU1352615 lncRNA upstream 12934 51503175 ~ 51505681 (-) True LOC110486743
TU1352711 lncRNA upstream 43050 51533291 ~ 51533538 (-) True G1186175
TU1352718 lncRNA upstream 50761 51541002 ~ 51541418 (-) True G1186182
TU1352719 lncRNA upstream 53815 51544056 ~ 51544359 (-) True G1186183
TU1352728 lncRNA upstream 63177 51553418 ~ 51553632 (-) True G1186189
XM_036941445.1 mRNA downstream 24959 51442887 ~ 51464818 (-) True LOC110486742
XM_021558565.2 mRNA downstream 30890 51442887 ~ 51458887 (-) False LOC110486742
XM_021558566.2 mRNA downstream 30890 51442887 ~ 51458887 (-) False LOC110486742
XM_021558567.2 mRNA downstream 30890 51442887 ~ 51458887 (-) False LOC110486742
XM_021558568.2 mRNA downstream 30890 51442887 ~ 51458887 (-) False LOC110486742
XR_005035586.1 mRNA upstream 12903 51503144 ~ 51507830 (-) False LOC110486743
XR_005035585.1 mRNA upstream 12903 51503144 ~ 51507874 (-) False LOC110486743
XR_005035587.1 mRNA upstream 28669 51518910 ~ 51522697 (-) True LOC118938316
XR_005035588.1 mRNA upstream 36373 51526614 ~ 51530761 (-) True LOC118938317
XM_021558574.2 mRNA upstream 69426 51559667 ~ 51562465 (-) True timm29
TU1352611 other downstream 115823 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 165846 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 707919 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 731733 50756638 ~ 50758044 (-) False LOC110485208
TU1351387 other downstream 861238 50626647 ~ 50628539 (-) True G1184986
TU1352963 other upstream 434722 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 520449 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 535677 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 1169090 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 2116783 53607024 ~ 53637813 (-) True mosmoa

Expression Profile