RNA id: TU1351947


Basic Information

Item Value
RNA id TU1351947
length 278
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1185501
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51543784 ~ 51544061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAAAGtgttgtgtgtttgagtgagtgtgtatatagtgtatatatactgGAGCTGTCTGGAGGTTAAAACATggctcctcctctttctcctctctccttcttatCTCATTTGAGGGAGACTCTCCTTTTCTTTATCTACACTTTTTATGTCAACTTCTTATCTCAAtttctctttatctctatctGTTTTACAGGGCTGTACTGTAAAAATTACTCTTCACTTAAACTCCATGGATGAATTATGAGTAACCATCACATGAAAAAACAGGTGTTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351945 lncRNA upstream 2650 51540856 ~ 51541134 (+) True G1185499
TU1351940 lncRNA upstream 10244 51533156 ~ 51533540 (+) True G1185494
TU1351932 lncRNA upstream 21769 51521510 ~ 51522015 (+) True G1185489
TU1351931 lncRNA upstream 22619 51520930 ~ 51521165 (+) True G1185488
TU1351930 lncRNA upstream 23634 51519829 ~ 51520150 (+) True G1185487
TU1351951 lncRNA downstream 5253 51549314 ~ 51549529 (+) True G1185505
TU1351953 lncRNA downstream 6903 51550964 ~ 51551225 (+) True G1185507
TU1351955 lncRNA downstream 9047 51553108 ~ 51553318 (+) True G1185509
TU1351956 lncRNA downstream 9639 51553700 ~ 51553936 (+) True G1185510
TU1351993 lncRNA downstream 15660 51559721 ~ 51561367 (+) True G1185534
XM_036941441.1 mRNA upstream 139204 51394438 ~ 51404580 (+) False LOC110486737
XM_036941442.1 mRNA upstream 139204 51394440 ~ 51404580 (+) True LOC110486737
XM_036941443.1 mRNA upstream 141256 51394436 ~ 51402528 (+) False LOC110486737
XM_021559466.2 mRNA upstream 149671 51391860 ~ 51394113 (+) False LOC110487554
XM_021558558.2 mRNA upstream 169793 51352198 ~ 51373991 (+) False LOC110486735
XM_021558573.2 mRNA downstream 18303 51562364 ~ 51566331 (+) True LOC110486745
XM_021558577.2 mRNA downstream 42185 51586246 ~ 51590496 (+) True LOC110486751
LOC118938087 mRNA downstream 219520 51763581 ~ 51764616 (+) False LOC118938087
XR_005035589.1 mRNA downstream 239827 51783888 ~ 51822874 (+) False LOC118938318
XM_036941448.1 mRNA downstream 239827 51783888 ~ 51823957 (+) True LOC118938318
TU1351876 other upstream 97227 51445907 ~ 51446557 (+) True G1185436
TU1351847 other upstream 151702 51384172 ~ 51392082 (+) True LOC110487554
TU1350772 other upstream 557218 50985813 ~ 50986566 (+) True G1184435
TU1350149 other upstream 1660349 49882821 ~ 49883435 (+) True G1183875
TU1350070 other upstream 1708770 49832221 ~ 49835014 (+) True G1183819
TU1351980 other downstream 83621 51627682 ~ 51628676 (+) True G1185521
TU1351986 other downstream 107552 51651613 ~ 51653770 (+) True G1185527
TU1351981 other downstream 149822 51693883 ~ 51695058 (+) True G1185522
TU1351994 other downstream 153815 51697876 ~ 51698646 (+) True G1185535
TU1352079 other downstream 173687 51717748 ~ 51718204 (+) True G1185616

Expression Profile