RNA id: TU1352766


Basic Information

Item Value
RNA id TU1352766
length 2713
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1186218
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51677018 ~ 52085973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTCACTTCAGTTACACTTTATTATCTTAATAGTTTAAAAAGGCACAATGAAATATTTACAAATCTAACCTCTACAGTTGAACTATTCAAACAAAATCAACAATAAAGACAAGCAGGAGAACAGTTACATGTATTGTATCCATTCATATACTGTATTGTAAGTATGAAAAGTAATATCTTCTTCAAGTACTTCAAACTCAGTTTCTTCATTTCACCTTGATGGCAGTTGCTCCAACGCCATACAGCAGAGTTATGAGGAAGAGTATGATGAAGGTGAAGGCTGTTTTTCCCATGCTGTCCCTGTCGGTTTCCATGGTGTTGCTGCATGGACAGTCAGTCAACACGAGACAATCTGCATGTGGATATGAGAACAGTGTCAGTAGGCAGTCAAAACGGTTACTCATCACTCTGGTGCCCAGTCTGAAACCCAATCACAAACCCCAACTTCTGGACACTTCTTGATGGCTCCTAAGAAATCTGAAAGTATTTGTCATAGATCTTAGTTCCGCCATCGCTCCAGCCATATTGTTAACAAGGGGGAGTTTTGCATGTAGCCTACCCTTACTGTTCATTGCAGATCTAAATGGGCTATCAATAAGTGTCAAACAGTTGGAATGGGTATACTTTGAACTGTTTTATGGGAAACAATGCATAGTACAGCTGTCTCCGGTATCAGTCATAGATAATACTGTCTCTGGTATTAGTCATAGATAATACTGTCTCCGGTATCAATCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATATTGTCTCCAGTATCAGTCATAGATAATACTTTCTCCGGTATCAGTCATAGATAATACTGTGTCCGGTATCAGTCATAGATAATACTGTCTCTGGTATCAATCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCTGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCCGGTATCAGTCATAGATAATACTGTCTCTGGTATCAGTCATAGATAATACTGTCTCCGGTATCAATCATAGATAATACCATATTCGGTAGGACGTGAGAAAAAAATCGAAAGCATACTTTGTCTATTGGACTTGAGCATGTTTTTTCTGCCTCACCCCCTATGACCTTTCATCAATTACTGAGTTATTACTTAACAAATACAACACATTGAAAATCTAAAACATGAGGATATCAAACCAGCAGTGAAGGTGACCCTGACTTGCTTTGGCCAAACGGCACACTTGCCGATCAATGGGGACTTCCAACTTCTACTTGGCTTGGCTTGCTTCTTGTGAACGAACCCTAGTCATATCTCATCCATTTCCAAACCCATGGTGGTAGACTTGAATCAATAGAACAGGCATATAGCATTTCTATAGGTGAGACCCAGTAGCGGGAACAGAAGCACACAAAGCCAAACAACAAGAAGACAGGACAGCCTGATTAAGTTCAATGCACTACATCTGATTACACCAAAAACATGAGGAGAATATCTGAAACAGCAGATAACTGGGTTGCTAATGCTAGAGCTACACTTCCATAGTTCATTCCTGTCATCAGGGGAACATTTTAACAATGTGCGTGTATATCACTTCTCTATTGTGTATAAGACTATAGCTCAGTGTGCAAAATAAGCTTTATACTAATACATTATTCAGTGTCCACCAATACTCTATTACAGAAAAATTGCATGGTAATTTGGCCTGATTGCAAATGTGAAGCATCAATACTTTGCTTGACTTGTATTGTCACTTTATCATTAGTTCTAGTAGTGTGAGAGTTGACATTTTCCCCAAACAGAGATACTGAAGCTATGCACAAAAgtggggagacaggacagacatgaGTAGGAACTgcatgacatacagtacataaacaggaTTAATGATTTAAAGTTTTTATTTGGATTTTGATTCTGCACTTAAAAGACACACAACATGTTATGTCACTGACACAAACAGCAGAGGTAACACGCAGCAACACAcatcaacaaaacacaacacaacctctACTGGGCCATGCATCTCTGAGGCACATTCAAGCTGAGGTTAACTAGGTTGGGTTGGTTTGAGGTTCTGTCAATGGTTCTCATAAGAATTTTTGTGGACTTGATCATGCTTTCGTGGTAAACTACACAGCTATACACCACTTCTTCGTTCTTCCACAAGTCATTGCTAAATGTGAGCTGACTGTAGACAGAGTAGGTCCTTCCTGATTGAATCTGGCTAGTGGTGTTGAATTGGTACAATGCTGAACTGCTCGTTCTCTCCACCGGCTCATCGTCAACAAGCCAAGCCACTAAAACGTCCTTGGGGTAGAAGTCTTTGACGTAGCAAGTCAGGGTCACCGTATTATCACTAGTTTGTTCTGCTGGAGCCAGCAGAAAGACAGATGGACGCTGTGGAACTCCTCCTGGAAGCATGAGAGAACAGTCAGCGCTTCTCCCCATGCAAGTACTTGGCAAACAATTTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352762 lncRNA downstream 2387 51907417 ~ 52067837 (-) False G1186218
TU1352763 lncRNA downstream 2387 52065639 ~ 52067837 (-) False G1186218
TU1352985 lncRNA downstream 92873 51971697 ~ 51977351 (-) True G1186398
TU1352759 lncRNA downstream 140374 51929208 ~ 51929850 (-) True G1186217
TU1352919 lncRNA downstream 196195 51869298 ~ 51874029 (-) False G1186348
TU1353025 lncRNA upstream 19372 52093360 ~ 52093778 (-) True G1186438
TU1353033 lncRNA upstream 31801 52105789 ~ 52106669 (-) True G1186446
TU1353063 lncRNA upstream 38660 52112648 ~ 52112958 (-) True G1186457
TU1353066 lncRNA upstream 43450 52117438 ~ 52117650 (-) True G1186460
TU1353078 lncRNA upstream 68909 52142897 ~ 52144110 (-) True G1186467
XM_036941454.1 mRNA downstream 463222 51592159 ~ 51607002 (-) True LOC110486749
XM_021558576.2 mRNA downstream 468612 51592159 ~ 51601612 (-) False LOC110486749
XM_021558575.2 mRNA downstream 468613 51592159 ~ 51601611 (-) False LOC110486749
XM_021558579.2 mRNA downstream 484633 51581861 ~ 51585591 (-) False LOC110486760
XM_036941447.1 mRNA downstream 489019 51566960 ~ 51581205 (-) True carm1
XR_005035767.1 mRNA upstream 26897 52100885 ~ 52101957 (-) True LOC118938556
XM_036939765.1 mRNA upstream 81652 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA upstream 112569 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA upstream 112569 52186557 ~ 52189703 (-) True LOC110538721
XM_036941458.1 mRNA upstream 341331 52415319 ~ 52430034 (-) False LOC110486769
TU1352962 other downstream 39564 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 41250 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 59013 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 579983 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 696270 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 585343 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1533036 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1732656 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2374895 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2391545 54465533 ~ 54470838 (-) True G1188127

Expression Profile