RNA id: TU1352917


Basic Information

Item Value
RNA id TU1352917
length 407
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1186348
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51869298 ~ 51874029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGACAGCCAGCCAGCAATTCATCCTGAGGACAGCCAGTTGAGGAaccctgctgtatatataTTTTTATACAGCGCTGCAGCCTCCTGTGTCACTGTGTTTCTGGCACAATAATAAACAGCAGAGTCTTCAGTCTTCAGGCTGTTCATCTGGAGATACACCTGCTGCTTGCTGTTGTCTCTGGAGATGGTGAACCGACCCTGGACTGACTGGGAGTAGTAGATTTCAGCACTATCATATTTTATAATGGCAATCCATTCAAGTCCTTTCCCAGGAACCTGTCTGATCCAAGCCATCCAGTAGCTACTGAATGTGAACCCAGAACCTGTACAGGTCACTTTGTGTGGTTCTCCAGTTATTTTTACAACTGGTCCAGACTCAGTCAGTGTCTGACCATGAACACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352618 lncRNA downstream 18490 51837324 ~ 51850988 (-) True G1186082
TU1352840 lncRNA downstream 55010 51742464 ~ 51814468 (-) True G1186283
TU1352872 lncRNA downstream 63458 51799784 ~ 51806020 (-) False G1186312
TU1352875 lncRNA downstream 63458 51799784 ~ 51806020 (-) True G1186312
TU1352874 lncRNA downstream 66433 51796793 ~ 51803045 (-) False G1186312
TU1352762 lncRNA upstream 36786 51907417 ~ 52067837 (-) False G1186218
TU1352759 lncRNA upstream 58577 51929208 ~ 51929850 (-) True G1186217
TU1352985 lncRNA upstream 101066 51971697 ~ 51977351 (-) True G1186398
TU1352763 lncRNA upstream 195008 52065639 ~ 52067837 (-) False G1186218
TU1352761 lncRNA upstream 199593 52070224 ~ 52085973 (-) False G1186218
XM_036941454.1 mRNA downstream 262476 51592159 ~ 51607002 (-) True LOC110486749
XM_021558576.2 mRNA downstream 267866 51592159 ~ 51601612 (-) False LOC110486749
XM_021558575.2 mRNA downstream 267867 51592159 ~ 51601611 (-) False LOC110486749
XM_021558579.2 mRNA downstream 283887 51581861 ~ 51585591 (-) False LOC110486760
XM_036941447.1 mRNA downstream 288273 51566960 ~ 51581205 (-) True carm1
XR_005035767.1 mRNA upstream 230254 52100885 ~ 52101957 (-) True LOC118938556
XM_036939765.1 mRNA upstream 285009 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA upstream 315926 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA upstream 315926 52186557 ~ 52189703 (-) True LOC110538721
XM_036941458.1 mRNA upstream 544688 52415319 ~ 52430034 (-) False LOC110486769
TU1352690 other downstream 379237 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 495524 51352309 ~ 51373954 (-) True G1186075
TU1352616 other downstream 545547 51321800 ~ 51323931 (-) True G1186080
TU1351447 other downstream 1087620 50780265 ~ 50781858 (-) True G1185046
TU1351422 other downstream 1111434 50756638 ~ 50758044 (-) False LOC110485208
TU1352963 other upstream 54332 51924963 ~ 52028974 (-) False G1186381
TU1352758 other upstream 140059 52010690 ~ 52011211 (-) True G1186216
TU1352962 other upstream 155287 52025918 ~ 52030660 (-) True G1186381
TU1353318 other upstream 788700 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1736393 53607024 ~ 53637813 (-) True mosmoa

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) LOC117598868 True 1064 V_segment 0.39 2 NC_047607.1 21675638 ~ 21676807 (-)