RNA id: TU1352155



Basic Information


Item Value
RNA id TU1352155
length 476
RNA type TUCP
GC content 0.47
exon number 2
gene id G1185687
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51881388 ~ 51881976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCTCAGCTGTATGCAAAGTtccacccctcttctctctgcATATAAAGAAAAGTGTGTACCTGTCTTTCACTCATTTGGAATAAACAAGTGCAGATCCCACCAGTCTAACTTCAACacaaatcatgtttcctgcataTCTGCTGCTGCTGGCAGGGGCCTCCTgtgTGTTCTGTCAGACTGAGCTCACACAGCCAGGCTTTTTGACCCTGCAGCCTGGACAGCCTCTGACCCTCTCCTGTAAGGTCTCTGGGTATTCTTTAACCAGTACCAGCTACTGTACAGGTTGGGTACGACAGCCTGCAGGAAAAGCACTGGAGTGGGTTGGAAACATGTGTGGCAGTGGTAACATATACTACAGTGATAAGCTGAAAAACAAATTCAGTATCTCCAGAGACACTTCCAGCAGCACAGTGACTTTAACAGGACAGAGTCTGCAGACTGAAGACACAGCTGTATATTATTGTGCTCGACGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1351997 lncRNA upstream 17098 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 144872 51731961 ~ 51736516 (+) True G1185623
TU1352040 lncRNA upstream 160399 51604070 ~ 51720989 (+) False G1185578
TU1352041 lncRNA upstream 160399 51720585 ~ 51720989 (+) True G1185578
TU1352024 lncRNA upstream 304633 51574021 ~ 51576755 (+) True G1185564
TU1352184 lncRNA downstream 43113 51925089 ~ 51929845 (+) False G1185714
TU1352183 lncRNA downstream 46885 51928861 ~ 51930454 (+) True G1185714
TU1352193 lncRNA downstream 74194 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA downstream 74792 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA downstream 75582 51957558 ~ 52023060 (+) False G1185722
LOC118938088 mRNA upstream 28502 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 57431 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 58514 51783888 ~ 51822874 (+) False LOC118938318
LOC118938087 mRNA upstream 116772 51763581 ~ 51764616 (+) False LOC118938087
XM_021558577.2 mRNA upstream 290892 51586246 ~ 51590496 (+) True LOC110486751
LOC110486748 mRNA downstream 54066 51936042 ~ 51941040 (+) False LOC110486748
XR_002468108.2 mRNA downstream 70140 51952116 ~ 51954859 (+) True LOC110486763
XM_036941452.1 mRNA downstream 166168 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 184002 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 184156 52066132 ~ 52091683 (+) False LOC110485215
TU1351990 other upstream 435 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 34008 51830790 ~ 51847380 (+) True G1185530
TU1352103 other upstream 115464 51760793 ~ 51765924 (+) False LOC118938087
TU1352104 other upstream 115464 51765421 ~ 51765924 (+) True LOC118938087
TU1351998 other upstream 147064 51733649 ~ 51734324 (+) True G1185539
TU1351984 other downstream 16980 51898956 ~ 51899716 (+) True G1185525
TU1351987 other downstream 81447 51963423 ~ 51965490 (+) True G1185528
TU1351973 other downstream 132555 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other downstream 164157 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 164729 52046705 ~ 52069615 (+) False LOC110485215

Expression Profile