RNA id: TU1352184


Basic Information

Item Value
RNA id TU1352184
length 1405
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1185714
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51925089 ~ 51930454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATGTACATGTCTATTATTACTGTGTATGGACAGTAATGTATCAGTATTGTATCATCATGACAAACTCCAGACTCGTCAGTTCCATTATTCAGTGATAGTTAGTGCAGGGCCCTCTGTAATGTCAGTCCAAGCTGCCTATAATGAGAAGTCCAGAGCTGACTGTCTGATTATAAagggatgaaggggaggaagACTTTTAATAGCCCTCTGGAGGTTTAAATAGAGACTAAGAGGGAGAGATATTCTTATAAGGTTTATATTGGCAGCATGTTTCTCAGAACAGCACAGAATGACAGAATCTATTGGGATTAATACAATAAACTTGTCCCATACTTGTTCCATTTATGTTTTCACTGTTTATAATGTGTGTGGATGTTTTATGTGGATAACATTGATATCAGTGGACATTGTGTTTTCCACTGCTGTTgagtagtgtttgtgtgtatatgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttaaatAACTGATACGCTAATTGCCCGTTTTTGTATGGCGATACAAGCTTCTTTGTCACTGTGTCTCTGGCACAATAATAAACAGCAGAGTCTTTGGTCTTCAGGCTTTTTACCTCGAGGTACAGCTGGTTTTTGGAGCTGTCTTTGGTGATGGTGAACTGGCACAATAATAAACAGCAGAGTCTTCAGTCTTCAGACTTTTCATCTCTAAGTACAGCTGGTTTTTGGAGGTGTCTTTGGTGATGGTGAACTGGCCCTGGAGAGACTGGGCATAATAAGCAGTGGTTCCAGTGTCAATGAATCCAATCCACTCCAATCCTTTCCCTGGTTTCTGACGGATCCAGTGCATGTAGTAGCTACCCATGGAGAATCCAGACACAGTACAGGACAGTGTTACTGACTCACTAGGTCTCTTCACGACTGGCTCAGAGGAGGTGAGTGACTGCCCCTGAACAACTGAAAAACAAACAGAGTTTAGATGACTATCACCCACCAGCCAATTAGAACAGCTCCTTTCCTGTCTCCTACACTGGAAACACATAACTCACCTGAGATGAGAGCCAGGAGGAACATGCATTCTAGAACTCTCATTGTGTTACGGATCTAAAATTCTGTAAAAGAAGCACAGACTGGGAGGGGTCGTCGTGACTGAGGGAGATGGTCTGTGGAGGGCAGTTATATCAGACTATTGAAATGGGAGGAGACCTTGGGTCTATGTGAACAGAAACACATTTGCATCTCAATGGTGTTACATGTTTCTCCCCGTAGATCTAGTGGTCTAAAATACTATGTATACTGGTACTGTTGTGAAAAGTTTTGGTGAAAACTCAAGGTGTACATGTAATAGTGACATAGCCACTTATTGTGCCAGTGTATCAATAAGAAGTTTTATTTTTATGGAGCAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351997 lncRNA upstream 60799 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 188573 51731961 ~ 51736516 (+) True G1185623
TU1352040 lncRNA upstream 204100 51604070 ~ 51720989 (+) False G1185578
TU1352041 lncRNA upstream 204100 51720585 ~ 51720989 (+) True G1185578
TU1352024 lncRNA upstream 348334 51574021 ~ 51576755 (+) True G1185564
TU1352193 lncRNA downstream 26325 51956170 ~ 52023060 (+) False G1185722
TU1352194 lncRNA downstream 26923 51956768 ~ 52023060 (+) False G1185722
TU1352196 lncRNA downstream 27713 51957558 ~ 52023060 (+) False G1185722
TU1352202 lncRNA downstream 41128 51970973 ~ 51975692 (+) True G1185726
TU1352195 lncRNA downstream 91968 52021813 ~ 52023060 (+) True G1185722
LOC118938088 mRNA upstream 72203 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 101132 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 102215 51783888 ~ 51822874 (+) False LOC118938318
LOC118938087 mRNA upstream 160473 51763581 ~ 51764616 (+) False LOC118938087
XM_021558577.2 mRNA upstream 334593 51586246 ~ 51590496 (+) True LOC110486751
LOC110486748 mRNA downstream 6197 51936042 ~ 51941040 (+) False LOC110486748
XR_002468108.2 mRNA downstream 22271 51952116 ~ 51954859 (+) True LOC110486763
XM_036941452.1 mRNA downstream 118299 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 136133 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 136287 52066132 ~ 52091683 (+) False LOC110485215
TU1351984 other upstream 25373 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 43113 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 44136 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 77709 51830790 ~ 51847380 (+) True G1185530
TU1352103 other upstream 159165 51760793 ~ 51765924 (+) False LOC118938087
TU1351987 other downstream 33578 51963423 ~ 51965490 (+) True G1185528
TU1351973 other downstream 84686 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other downstream 116288 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 116860 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other downstream 118298 52048143 ~ 52069615 (+) True LOC110485215

Expression Profile