RNA id: TU1352196


Basic Information

Item Value
RNA id TU1352196
length 782
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G1185722
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51956170 ~ 52023060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcccattgtgttagtcagttgttttaccattgtgttagtcagttgttttactattgtatcagtcagttgttttaccattgtgttagtcagttattttcccattgtgttagtcagttgttttcccattgtgttagtcagttgttttactattgtgttagtcagttgttttactattgtgttagtcagttgttttaccattgtgttagtcagttgttttcccattgtgttagtcagttgttttactattgtgttagtcagttgttttactattgtatcagtcagttgttttactattgtgttagccagttgttttactattgtgttagccagttgttttaccattgtgttagtcagttgttttcccattgtgttagtcagttgttttactattgtatcagtcagttgttttactattgtgttagtcagttgttttcccattgtgttagtcagttgttttcccattgtgttagtcagttgttttactattgtgttagtcagttgttttcccattgtgttagtcagttgttttactattgtgttagtcagttgttttaccattgtgttagtcagttgttttcccattgtgttagtcagttgttttcccattgtgttagtcagttgttctactattgtgttagtcagttgttttactattgtgttagtcagttgtttccccattgtgttagtcagttgttttaccactgtgttagtcagttgttttaccactGTGTTagccagttgttttactattgtatcagtcagttgttttactattgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351979 lncRNA upstream 19490 51779397 ~ 51938068 (+) True LOC110486748
TU1352183 lncRNA upstream 27104 51928861 ~ 51930454 (+) True G1185714
TU1352184 lncRNA upstream 27713 51925089 ~ 51929845 (+) False G1185714
TU1351997 lncRNA upstream 93268 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 221042 51731961 ~ 51736516 (+) True G1185623
TU1351978 lncRNA downstream 46765 52069825 ~ 52070857 (+) True G1185519
TU1352000 lncRNA downstream 49180 52072240 ~ 52074041 (+) True G1185541
TU1352250 lncRNA downstream 70315 52093375 ~ 52093611 (+) True G1185774
TU1352251 lncRNA downstream 71641 52094701 ~ 52095145 (+) True G1185775
TU1352258 lncRNA downstream 79317 52102377 ~ 52102600 (+) True G1185782
XR_002468108.2 mRNA upstream 2699 51952116 ~ 51954859 (+) True LOC110486763
LOC110486748 mRNA upstream 16518 51936042 ~ 51941040 (+) False LOC110486748
LOC118938088 mRNA upstream 104672 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 133601 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 134684 51783888 ~ 51822874 (+) False LOC118938318
XM_036941452.1 mRNA downstream 25084 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 42918 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 43072 52066132 ~ 52091683 (+) False LOC110485215
XM_036941449.1 mRNA downstream 43276 52066336 ~ 52091683 (+) False LOC110485215
XM_036941453.1 mRNA downstream 43616 52066676 ~ 52091683 (+) False LOC110485215
TU1351984 other upstream 57842 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 75582 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 76605 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 110178 51830790 ~ 51847380 (+) True G1185530
TU1352104 other upstream 191634 51765421 ~ 51765924 (+) True LOC118938087
TU1351972 other downstream 23073 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 23645 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other downstream 25083 52048143 ~ 52069615 (+) True LOC110485215
TU1352263 other downstream 98517 52121577 ~ 52132027 (+) True LOC110486764
TU1352291 other downstream 152206 52175266 ~ 52176505 (+) True G1185815