RNA id: TU1351987


Basic Information

Item Value
RNA id TU1351987
length 1910
RNA type TUCP
GC content 0.40
exon number 2
gene id G1185528
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 51963423 ~ 51965490 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGCTGAGTTCATATCTCTACCCTCAGTATGACGGGAACACTCTGccttctgctgctctctctctgtctgacctgttGCAATGGTCAGAGTCTGGAGTCCATTCCCTCTAGTCCAGTCCAGAAAAATCCCGGAGAAACTCTCAGTCTGTCCTGTAAGATATCTGGATTCACCTTTGACAGCCACAACACACACTGGATACGACAGCCAGCAGGAAAATCCCTGGAGTGGTTGGGTTTTTCTGGATTAGGCCTAGGTTACCATGCTAAAAGGTTTGAAGGACGTATGGAAACCACTAAAGATACTAGTAACAGCATGTTGACTTTGATGCTGTCTGGTCTGAGAACAGAGGACTCTGCTGTGTATTACTGTGCAAGAGACACAGTGGTGTGAGTGAGTGAAGATTCTGTACAAAAACCCATCAGAGAATCTAACTGGCAGTAGAGTCAACAGAGCGCATCAGTACAGCAGAGTAACATTCAATGAAAGTCTCAACCAGTATATTGTCAACACAACTACATTAACACAATGTACAccagaggaggcaggagggatgaGCTATCGGagaacaggctcattgtaatgtatGGAATCTATCTAAATGGAACGGTGTCAAACACATCAATCAAACCtcggttttaaggtctctgcactggctgtCTGTGAGTTTTAGCATGCATTTTAAGATTCTTCtattgtttttttaatcaatCCATGATTGTGCTCCCCAAAACATTACAAATATGCTTTTAAATTATGTACCCAGTTGGTCCCTCAGATCttctggcactggccttttaactatcccaaagcctaggaccaagaggcatggtgTAATGGTTGTCTTCCTCCTCTGATGAGGAGGAATAGTAGGAAGGAggaccaatgcacagcgtggtaagtgttcatagctTTTAATgaataatgaacactgaacaaaacaataaacgacaacgtgaaataacaaactaaaacagtaccgtgtggaacAAACACTAACAgggaaaacaatcacccacaaaacacaagaaaacaggctacctaaatatggttctcaatcagggacaacgatcgacagctgcctctgattgagaaccattccacgccaaacacagaaatagtaaatcatagaaaaactaacatagacaacccacccaactcacgtcctgaccatactaaaacaatgacaaaacaaaagaactaaggtcagaacgtgacacatggaGAGGCAGGCTTTATTTACAATGCCCACCACCTCTGGAATTGCCTGCCAGAAAACTTGAAGGGGGTCAAAACTGTGGACATTTTTTAAAGACATCTTAAAACACACATTTTTAAGCGTTGCTTTTCCTAAGGCTGCTTTTTATTCCTTCAGTTTTTAGTGTTATTATTTTTATCATGTTTTCCCAGTGAAGCATATTGTAAATAGTTGAAGTGTGAGGTGTTGTAAATAAATAGTTTAAGTCTCATTCATTTTGACCAAGACAGGGTTTACCTACTTATGACTACTTCGTTTGTCATGTTAGTTTCTTGCGCCAATTAATCTATCTTTAGAGTCTACTTCAGAAAAACTCTTTGTCCCTTATAGGCCTAGCTTTACAATAAAACACCTTGTCTGATTAGATACCTGATGCATGTTTACAGTAACAAATGTGTTATAGAAGGAATAGAAGTGGCTAACAACAAATGCATGATTACATCTTAAAATAGCCGATGACCACTTGAAGAGCTTTGCAGAGCTGATCATTGCTCGCTGGAACATTTGTGTCATTGTCACCGGCTACAAAACAAGTAGGACTGTCCTCGACTAAATAAAATCTTGGTTGATTGAGAGTCATCTGTTATTACAACCAATCGACTTTTCAGAAATTTGAAACATGTCTTTTTccatatagacacaccctatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1351979 lncRNA upstream 25355 51779397 ~ 51938068 (+) True LOC110486748
TU1352183 lncRNA upstream 32969 51928861 ~ 51930454 (+) True G1185714
TU1352184 lncRNA upstream 33578 51925089 ~ 51929845 (+) False G1185714
TU1351997 lncRNA upstream 99133 51862593 ~ 51864290 (+) True G1185538
TU1352088 lncRNA upstream 226907 51731961 ~ 51736516 (+) True G1185623
TU1352202 lncRNA downstream 5483 51970973 ~ 51975692 (+) True G1185726
TU1352195 lncRNA downstream 56323 52021813 ~ 52023060 (+) True G1185722
TU1351978 lncRNA downstream 104335 52069825 ~ 52070857 (+) True G1185519
TU1352000 lncRNA downstream 106750 52072240 ~ 52074041 (+) True G1185541
TU1352250 lncRNA downstream 127885 52093375 ~ 52093611 (+) True G1185774
XR_002468108.2 mRNA upstream 8564 51952116 ~ 51954859 (+) True LOC110486763
LOC110486748 mRNA upstream 22383 51936042 ~ 51941040 (+) False LOC110486748
LOC118938088 mRNA upstream 110537 51840452 ~ 51852886 (+) True LOC118938088
XM_036941448.1 mRNA upstream 139466 51783888 ~ 51823957 (+) True LOC118938318
XR_005035589.1 mRNA upstream 140549 51783888 ~ 51822874 (+) False LOC118938318
XM_036941452.1 mRNA downstream 82654 52048144 ~ 52091683 (+) False LOC110485215
XM_036941451.1 mRNA downstream 100488 52065978 ~ 52091683 (+) False LOC110485215
XM_036941450.1 mRNA downstream 100642 52066132 ~ 52091683 (+) False LOC110485215
XM_036941449.1 mRNA downstream 100846 52066336 ~ 52091683 (+) False LOC110485215
XM_036941453.1 mRNA downstream 101186 52066676 ~ 52091683 (+) False LOC110485215
TU1351984 other upstream 63707 51898956 ~ 51899716 (+) True G1185525
TU1352155 other upstream 81447 51881388 ~ 51881976 (+) True G1185687
TU1351990 other upstream 82470 51869301 ~ 51880953 (+) True G1185531
TU1351989 other upstream 116043 51830790 ~ 51847380 (+) True G1185530
TU1352103 other upstream 197499 51760793 ~ 51765924 (+) False LOC118938087
TU1351973 other downstream 49041 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other downstream 80643 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other downstream 81215 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other downstream 82653 52048143 ~ 52069615 (+) True LOC110485215
TU1352263 other downstream 156087 52121577 ~ 52132027 (+) True LOC110486764

Expression Profile