RNA id: TU1352251


Basic Information

Item Value
RNA id TU1352251
length 445
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1185775
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52094701 ~ 52095145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatcaaacgctccctgaaacacttcagcaaacaggcctttctaatcgacctggccagggtatcctggaaggatattgatctcattccgtcagtagaggatgcctggttattttttttaaatgccttcctcaccatcttaaataagcatgccccattcaagaaatttagaaccaggaacagatatagcccttggttctctccagacctgactgcccttaaccaacacaaaaacatcctatggtgttctgcattagcagcccccgtgatatgcaacttttcagggaagctagaaaccaatatacagaggcagttagaaaagccaaggctagctttttcaagcagaaatttgcttcctgcgacacaaactcaaaaaagttctgggacacctcctcctagctgcccactgcactgaagataggaaacactgtcaccaccgataaatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352250 lncRNA upstream 1090 52093375 ~ 52093611 (+) True G1185774
TU1352000 lncRNA upstream 20660 52072240 ~ 52074041 (+) True G1185541
TU1351978 lncRNA upstream 23844 52069825 ~ 52070857 (+) True G1185519
TU1352196 lncRNA upstream 71641 51957558 ~ 52023060 (+) False G1185722
TU1352258 lncRNA downstream 7232 52102377 ~ 52102600 (+) True G1185782
TU1352259 lncRNA downstream 7653 52102798 ~ 52103079 (+) True G1185783
TU1352269 lncRNA downstream 9652 52104797 ~ 52107657 (+) True G1185793
TU1352271 lncRNA downstream 15151 52110296 ~ 52110508 (+) True G1185795
TU1352281 lncRNA downstream 45048 52140193 ~ 52140419 (+) True G1185805
XM_036941452.1 mRNA upstream 3018 52048144 ~ 52091683 (+) False LOC110485215
XM_021558580.2 mRNA downstream 26338 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA downstream 26610 52121755 ~ 52139499 (+) False LOC110486764
XM_021558582.2 mRNA downstream 46128 52141273 ~ 52142730 (+) True LOC110486765
XM_036941457.1 mRNA downstream 279679 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 279680 52374825 ~ 52390015 (+) False LOC110486767
TU1351973 other upstream 25086 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other upstream 25086 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other upstream 25086 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other upstream 25086 52048143 ~ 52069615 (+) True LOC110485215
TU1351987 other upstream 129211 51963423 ~ 51965490 (+) True G1185528
TU1352263 other downstream 26432 52121577 ~ 52132027 (+) True LOC110486764
TU1352291 other downstream 80121 52175266 ~ 52176505 (+) True G1185815
TU1352351 other downstream 179185 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 283725 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 908907 53004052 ~ 53022981 (+) True LOC110539012

Expression Profile