RNA id: TU1353078


Basic Information

Item Value
RNA id TU1353078
length 1214
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1186467
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52142897 ~ 52144110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtttatacttgcgtactattgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaatgacctgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagttaacaagaaaattgtggagtggttgaaaaacaagctttaatgaccccaacctaagtgtatgtatacttctgacttcaactgtatgctgagcacttgttggctgcttttccttcacacagAAAGTAGAGGTTTTTACACTTGGAACCGGCAGGTTTGCTCGACCTTATTTATGGTTTCCACGCACATAAAAGTGGTGGAAATGAGGGAATTAGTGAAGGTATACAGCATATCTGCAAAAACACCTCCACCACACCTTCATTTCTTACATCTCCACCCAGAATGAATTGCAGGTGCTAttctcattcaattcaaggtcAGAAAAAGCATAGAGAAAAAAGTGCATACAAAGGGAATTCCATTCCATTTACATGCGCTTAACTTGGTTCGGAATCGGCCCCCAGCAGCGAAAAAACAAACACCCATTTTCAAACCCTCATGAAAGCAGCTCCAGGCAGCCCCTTATTGCCGTTTCACACTGTCTTTTTGTCTGATTATCCGACCAGAATCTTGGTCCAGATGCATGGGCCAGTCGTGCAGTCATGCCCAGATTGTGATTGGGGTGGTCAGGCCGATGCCCCTGCATGCCACTAGGAGAACAGTGTCCCATGTCTGACTGTACTCCACAGCTGCCAGGGTGGCACAATAGaccctctctctcaattttcCCTAGGTGAACAACAAAAGTGATACATTGTACCCATTCCTAACGTAATTTCATGACCGGGAAATAGTGTTTGTCCTGCGTCCCATTCTTTACAGCAGCGTAACCTCCTGGAAatataacctgtgtgtgtgtgtgtgtgagagagagagcgagagaatagcGATGACACAGCGTGCTTCCGACTCATCACACCCATTGCCGTTTCCTCCCCACACACTCCATGGGGCAATATTCTTACTACCCTTGTTTCTTTAGTCACGCGGACTCCATACCACACCCACATCCGCCCAACCACTGGGTACAGATGTCAGCTTAACGTTCATTTTTTATTTacgtttggttgagttgtcaactaacgtgaattcaacaaaAATGTGACCATGTCATCAGGATTTAAGTTAAACG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353066 lncRNA downstream 25247 52117438 ~ 52117650 (-) True G1186460
TU1353063 lncRNA downstream 29939 52112648 ~ 52112958 (-) True G1186457
TU1353033 lncRNA downstream 36228 52105789 ~ 52106669 (-) True G1186446
TU1353025 lncRNA downstream 49119 52093360 ~ 52093778 (-) True G1186438
TU1352761 lncRNA downstream 56924 52070224 ~ 52085973 (-) False G1186218
TU1353035 lncRNA upstream 11531 52155641 ~ 52160170 (-) False LOC110485216
TU1353037 lncRNA upstream 11531 52155641 ~ 52160170 (-) False LOC110485216
TU1353039 lncRNA upstream 11531 52155641 ~ 52160170 (-) False LOC110485216
TU1353040 lncRNA upstream 11531 52155641 ~ 52160170 (-) False LOC110485216
TU1353041 lncRNA upstream 11531 52155641 ~ 52160170 (-) False LOC110485216
XR_005035767.1 mRNA downstream 40940 52100885 ~ 52101957 (-) True LOC118938556
XM_036941454.1 mRNA downstream 535895 51592159 ~ 51607002 (-) True LOC110486749
XM_021558576.2 mRNA downstream 541285 51592159 ~ 51601612 (-) False LOC110486749
XM_021558575.2 mRNA downstream 541286 51592159 ~ 51601611 (-) False LOC110486749
XM_021558579.2 mRNA downstream 557306 51581861 ~ 51585591 (-) False LOC110486760
XM_036939765.1 mRNA upstream 11530 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA upstream 42447 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA upstream 42447 52186557 ~ 52189703 (-) True LOC110538721
XM_036941458.1 mRNA upstream 271209 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA upstream 271209 52415319 ~ 52430034 (-) False LOC110486769
TU1352962 other downstream 112237 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 113923 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 131686 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 652656 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 768943 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 515221 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1462914 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1662534 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2304773 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2321423 54465533 ~ 54470838 (-) True G1188127

Expression Profile