RNA id: TU1352262


Basic Information

Item Value
RNA id TU1352262
length 301
lncRNA type antisense_over
GC content 0.64
exon number 1
gene id G1185786
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52161790 ~ 52162090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGTGTGTCATGCACTCTCTGCCCTCGCTGGGTGACCGTGACCAGCGACGGTCGTGCTCCCTATCCCGGTCGTGGTCTCTGTCTCCTCGGGGCTGTCTGTGACCACCGTGCTCTCCCCCCCGGTCGGCGCGGTCGGCACGGTCTGGTGTGTAGCGCTCCTTGTCCACAGAGCCgctgtgatggtggtggtgatggtggtggtgtttgcGGTCTTTCTGCCGACCGCGGTCTCTGTCGCGGTCACGGTCCTTCTCCTTGGGTGGCAGGTCACCTGACTGAGTGGTGGTGCTCAAGTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352283 lncRNA upstream 18532 52142834 ~ 52143258 (+) True G1185807
TU1352281 lncRNA upstream 21371 52140193 ~ 52140419 (+) True G1185805
TU1352271 lncRNA upstream 51282 52110296 ~ 52110508 (+) True G1185795
TU1352269 lncRNA upstream 54133 52104797 ~ 52107657 (+) True G1185793
TU1352259 lncRNA upstream 58711 52102798 ~ 52103079 (+) True G1185783
TU1352288 lncRNA downstream 7666 52169756 ~ 52170717 (+) True G1185812
TU1352305 lncRNA downstream 16087 52178177 ~ 52184170 (+) True G1185817
TU1352329 lncRNA downstream 71697 52233787 ~ 52234842 (+) True G1185835
TU1352264 lncRNA downstream 82723 52244813 ~ 52246538 (+) True G1185788
TU1352336 lncRNA downstream 95261 52257351 ~ 52258201 (+) True G1185841
XM_021558582.2 mRNA upstream 19060 52141273 ~ 52142730 (+) True LOC110486765
XM_021558580.2 mRNA upstream 22291 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA upstream 22291 52121755 ~ 52139499 (+) False LOC110486764
XM_036941449.1 mRNA upstream 70107 52066336 ~ 52091683 (+) False LOC110485215
XM_036941457.1 mRNA downstream 212734 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 212735 52374825 ~ 52390015 (+) False LOC110486767
XM_036941463.1 mRNA downstream 244087 52406177 ~ 52414576 (+) True LOC110485217
XR_005035768.1 mRNA downstream 281899 52443989 ~ 52444998 (+) True LOC118938557
XM_021558588.2 mRNA downstream 290704 52452794 ~ 52612169 (+) False LOC110486773
TU1352263 other upstream 29763 52121577 ~ 52132027 (+) True LOC110486764
TU1351973 other upstream 92175 52014531 ~ 52069615 (+) False LOC110485215
TU1352291 other downstream 13176 52175266 ~ 52176505 (+) True G1185815
TU1352351 other downstream 112240 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 216780 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 841962 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 1284333 53446423 ~ 53450464 (+) False LOC110538743

Expression Profile