RNA id: TU1352291


Basic Information

Item Value
RNA id TU1352291
length 1240
RNA type TUCP
GC content 0.41
exon number 1
gene id G1185815
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52175266 ~ 52176505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatgtttgagatactttaaagtagccaccctttgccttgatgacagctttgcacacttttggcattctctcaaccagcttcatgaggtagccatctggaatgcatttcatataaggttaacaggtgtgccttggtaaaagtaaatttgtggaatttatttcctttcttaatgtatttgagcaaatcagttgtgttgtgacaaagtagggatggtataaagaagatagccctatttggtaaaagatattatggcaagaacagctctaataagtaaagagaaacgacagtccatcattactttaagacatgaagatcagtcaattaagaaaatgtcaagaactttgaaagtttcttcaagtgcagtcgcaagaaccatcaagcgctataatgaaactggctctcatgaggatctcCACAGGAATggaaacccagagttacctctgctgcagaggataatttcattagagttaccattctcagaaattgcaacccaaataaatgcttcacagagttcaagtaagacacatatctcaacatcaactgttcagaggagaatcaggccttcatggtcgaactgcagcaaagaaaccactactaaaggacaccaataataagaagagacttactttggccaagaaacatgagcaatggacattagagcggtggaaatctgtccttcggtctgatgagtccaaatgtttgatttttggttccaaccgcctgtgtctttgtgagacgcagagtaggtgaaaggatgatctccgcatgtgtgcttcccaccgtgaagcatggaggaggaggtgtgatgttgtggggttgctttgatggtgacactgtctgtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcgatatgctctcccatctggtttgtgcttagtgggactatcatttgtttttcaacatgacaatgtcccaaaacacacctccaggctgtgtaagggctgtttgaccaagaatgagagtgatggaatgtttcatcagatgacctggcctccacaatcacccgacctcaagaaaagcagccaacaagtgctcagcatatgtggaaactccttcaagactactggttgagagaatgccaagagagtgcaaagctactgtgcatgtgatggctactttgaataatctcaaatgtattttgattggtttaacacttttctggttactacattattccatatgtgcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352288 lncRNA upstream 4549 52169756 ~ 52170717 (+) True G1185812
TU1352262 lncRNA upstream 13176 52161790 ~ 52162090 (+) True G1185786
TU1352283 lncRNA upstream 32008 52142834 ~ 52143258 (+) True G1185807
TU1352281 lncRNA upstream 34847 52140193 ~ 52140419 (+) True G1185805
TU1352271 lncRNA upstream 64758 52110296 ~ 52110508 (+) True G1185795
TU1352305 lncRNA downstream 1672 52178177 ~ 52184170 (+) True G1185817
TU1352329 lncRNA downstream 57282 52233787 ~ 52234842 (+) True G1185835
TU1352264 lncRNA downstream 68308 52244813 ~ 52246538 (+) True G1185788
TU1352336 lncRNA downstream 80846 52257351 ~ 52258201 (+) True G1185841
TU1352410 lncRNA downstream 169608 52346113 ~ 52346901 (+) True G1185898
XM_021558582.2 mRNA upstream 32536 52141273 ~ 52142730 (+) True LOC110486765
XM_021558580.2 mRNA upstream 35767 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA upstream 35767 52121755 ~ 52139499 (+) False LOC110486764
XM_036941452.1 mRNA upstream 83583 52048144 ~ 52091683 (+) False LOC110485215
XM_036941457.1 mRNA downstream 198319 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 198320 52374825 ~ 52390015 (+) False LOC110486767
XM_036941463.1 mRNA downstream 229672 52406177 ~ 52414576 (+) True LOC110485217
XR_005035768.1 mRNA downstream 267484 52443989 ~ 52444998 (+) True LOC118938557
XM_021558588.2 mRNA downstream 276289 52452794 ~ 52612169 (+) False LOC110486773
TU1352263 other upstream 43239 52121577 ~ 52132027 (+) True LOC110486764
TU1351973 other upstream 105651 52014531 ~ 52069615 (+) False LOC110485215
TU1351972 other upstream 105651 52046133 ~ 52069615 (+) False LOC110485215
TU1351975 other upstream 105651 52046705 ~ 52069615 (+) False LOC110485215
TU1351964 other upstream 105651 52048143 ~ 52069615 (+) True LOC110485215
TU1352351 other downstream 97825 52274330 ~ 52355941 (+) True G1185855
TU1352390 other downstream 202365 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 827547 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 1269918 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 1269918 53446423 ~ 53449716 (+) True LOC110538743

Expression Profile