RNA id: TU1352410


Basic Information

Item Value
RNA id TU1352410
length 333
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G1185898
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52346113 ~ 52346901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtaacataatgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacgtactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacgtactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacatactgtatagaacaaaatgtaacgtactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacgtactgtatcgaacaaaatgtaacatactgtatcgaacaaaatgtaacatactgtatagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352336 lncRNA upstream 87912 52257351 ~ 52258201 (+) True G1185841
TU1352264 lncRNA upstream 99575 52244813 ~ 52246538 (+) True G1185788
TU1352329 lncRNA upstream 111271 52233787 ~ 52234842 (+) True G1185835
TU1352305 lncRNA upstream 161943 52178177 ~ 52184170 (+) True G1185817
TU1352288 lncRNA upstream 175396 52169756 ~ 52170717 (+) True G1185812
TU1352413 lncRNA downstream 3147 52350048 ~ 52359478 (+) True G1185900
TU1352397 lncRNA downstream 56121 52403022 ~ 52403680 (+) True G1185887
TU1352463 lncRNA downstream 137578 52484479 ~ 52485136 (+) True G1185940
TU1352445 lncRNA downstream 264123 52611024 ~ 52612079 (+) False LOC110486773
TU1352446 lncRNA downstream 264279 52611180 ~ 52612158 (+) True LOC110486773
XM_021558582.2 mRNA upstream 203383 52141273 ~ 52142730 (+) True LOC110486765
XM_021558580.2 mRNA upstream 206614 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA upstream 206614 52121755 ~ 52139499 (+) False LOC110486764
XM_036941449.1 mRNA upstream 254430 52066336 ~ 52091683 (+) False LOC110485215
XM_036941457.1 mRNA downstream 27923 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA downstream 27924 52374825 ~ 52390015 (+) False LOC110486767
XM_036941463.1 mRNA downstream 59276 52406177 ~ 52414576 (+) True LOC110485217
XR_005035768.1 mRNA downstream 97088 52443989 ~ 52444998 (+) True LOC118938557
XM_021558588.2 mRNA downstream 105893 52452794 ~ 52612169 (+) False LOC110486773
TU1352291 other upstream 169608 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 214086 52121577 ~ 52132027 (+) True LOC110486764
TU1351972 other upstream 276498 52046133 ~ 52069615 (+) False LOC110485215
TU1352390 other downstream 31969 52378870 ~ 52389196 (+) True LOC110486767
TU1353565 other downstream 657151 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 1099522 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 1099522 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1841666 54188567 ~ 54198015 (+) False G1187452

Expression Profile