RNA id: TU1353164


Basic Information

Item Value
RNA id TU1353164
length 4313
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1186536
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52388818 ~ 52393251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAATCAAACACCCagttcaaacagagagggatgctatgttagctagctggctatggctatccaacactggaactccaagtcaaggtaagcttttggttttataaatgtattgccaccCGACGATATAATTGCTAAACTGgttgctgtacactgtactgcatgattgtagcgggtatACTGAcgcattagttctagtagctatgttgactatgactttaatatggtgaaaaggatgtaggctgtgtgtagcagttagcgGTTATGGTATGAAAGTTTGGCAAGGAAATATTTTTGGGGCCTGGTCAGGAAGCTGTTGCATTATGCACTGAAGTCCACATGCAAAGGAAAAAGTTGAGAGGAGAGCGTAAATGCGAGAggaattatactgtatatacaatgaGCAAAGGTATTGTGGTTTATATGTGGCTGCTAGttctgtgtttgcgtgtgatcaggggtgtattcattctgtggattctgttgaaaaaccttTCTTAAGcggaagcaaacggaatgaaatggggataaacataaCTGAATTTGTTCAAAAGTatctcttgtttgcaactgttggactaatggttacaccctagatcagctagatgcaggcaagagtgtgcaaggaagtattgaatgtgtcaccttgattactcaaatttctctTGACCTGTGAACCTACGAACCTTTCATTCGTAGGCTAGCTTGTACCAACCttatgatgggtatagggaaaataaTTTAGTCGCGTCATGTagcagcctaaacctatcgatgttacattgacctgggttaatggaatatgaatgacagtcatccaatatgctttaATCGAAATAAGGCCAccctcatgaaaaaaaaaaatcatcctccgtcatcttaaacggcaccgactgGCAAAAAAAAGCCTCAGTTGAAACCCCAATCTGATCATGGTTCATTTAATATGAGTAGGAGTGTAACAACTCCATCTGATTCACAGGGACTTTGTTCATTTGATGAGCAGGTCCAAAGCCTGGTACAATAGCTCAGATAACCCTTATGAGTGGTACGCCGCAACCCATTGCACAATACCTCAGAAAACCATAATGAGTGTTACACCGCAACCCATTACACAATACCTCAGAAAACCATCATGAGTGGTACGCCGCAACCCATTACACAATACCTCAGAAAACCATCTTGAGTGGTACGCCGCAACCCATTACACAATACCTCAGAAAACCATCATGAGTGGTACGGCGCAACCCATTACACAATACCTCAGAAAACCATCATGAGTGGTACGCCGCAACCCATTACACAATACCTCAGAAAACCATCTTGAGTGGTACGCCGCAACCCATTACACAATACCTCAGAAAACCATCAGGAGTGGTACGCCGCAACCCATTACACAATACCTCAGAAAACCATCATGAGTGGTACGCCGCAACCCATTACCTCAGAAAACCATCATGATGGTACGCCGCAACCCATTACCTCAGAAAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCAGAAAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACGCCGCAACCCATTATCTCAGAAAACCATCATGAGTGGTACAGCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCAAAACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCTGATAACCCCCATGAGTGGTACCGCACAACCCATTACCTCAGATAACCCCCCTGAGTGGTACCATGCAACCCATTACCTCAGATAACCCCCATGAGAGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACGCCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACGCCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAATGGTACTGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACGCCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCTATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATTAGTGGTACGCCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGTACCCCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACCCATGAGTGGTACCCATGAGTGGTACCCCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACCCCACAACCCATTACCTCAGATAACCCTCATGAATGGTACTCCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCAAAACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCATTATCTCAGATAACCCTCATGAGTGGTACAGCGCAACCCATTACCTCAGATAACCCTCATGCGTGGTACAGCGCAACCCATTACCTCTGATAACCCCCATGAGTGGTACCGCGCAACCCATTACCTCAGATAACCCCCATGAGTGGCAGACTAACACATTAAACTATATCTTAGCCAACCCGTTAAGGGTGATAGACTAAGTAACAAGGCTCAAGATTCAAAGCCTGGTCATTTCATGTTCATGAATGTTGCATTTTACCTAATGAAACCCACTGCGCGTGGTAACTGTAAAAAGTCTACTGACTGCTAGGATACACATTACGGGCTGTAACTGTAGAAACAATGTAGCTTTATTCACATCAGGGGAATTTAACAAAACAAGGTTGCTATATTCACGTCAGGGGAACCTCCTTATTTCATTTTCGTGTATTGCACTTTCATTCAGTATGAATCACATGATTATGAAGGCATAAATGTAGGAAAGAGAATATTATTTTAAATGTATGGATTGTAGTTCTATCCTTGTGatgtattacatcatgtttttGTGGACCCCAGTAAGAGCAGTAGCTAATGGAGAcgctaataaaatactaaataccaCTGACAGATTTTTTTATAAACAATGATGGTAAAACATGGGTTTAAAAATGAAGTTTAGTCATTAATTTaatcagattattattttttaaacaggaCATGGGCATGAGTCCTCTGGTTATAGGTGCCGGGTTGGAGAAGAGTTTCAAACGGTTTCTATACAGATATCCACACATTAAACAATTTGGATGGATGGACAAGGAGTTACAGATTATAGATATGCGTTCTAAAAAATATTCTGAAAAATGTCACCAGTTATTTCCCAGGCTCCGCATTGTAGCCTTCTATAACGCTCATGAGCGACGTCGAAAATAGGGCTATAACTATTTGAAGTATCCATTTACCTCTAAGAATTCAAAGCAATTGGTAATTACCTAGTACAGATCTTGGATAGAAAATGCAGGTTCTTCTTCAACTGGTTCTCCTACAACTTATCAACTTGCCTTTCTATGTGGCATTTTTGAAAAGGCTAATAACTCAGATTCATTATATAATATTAATTAGCATAAGAAGTTCATAGATACTTATGACAAGTCTTGTAATGCATTATGACCCTTTGAAATGCATCATACCTGAATGCCTTCCCAACATTTAATTCAGAATCAAATCCTGTACAGGTAGTTTATTATGAAGTGCTCCAATGAAAACTGATAAGGGAAACATCTAAATCATCTTTCCCAACATAGTCTCTCGCAGTGAGAAAGCGTGTACATCACATTTTAGCACAGTGATGTTCTTGAAGTCTCAGATACCGAGCTCTGGCTACTGCCAGTGAGACTGTCACAGTTGTGTCCCTCTTGGCTCTCATGCTTCAAACAGGAAGGTTCCGGCAGATGACAGAGATGCGGCGATGGCGGGGAACTCTCTGTCCAGAGAAAAGAGACTCATCATCTTTAAGGATCTCATGGGTGAACTTATATCTGGCCTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353181 lncRNA downstream 18681 52347624 ~ 52370137 (-) True G1186547
TU1353094 lncRNA downstream 173930 52206862 ~ 52214888 (-) True G1186481
TU1353041 lncRNA downstream 228648 52155641 ~ 52160170 (-) False LOC110485216
TU1353201 lncRNA upstream 7693 52400944 ~ 52402441 (-) True G1186562
TU1353202 lncRNA upstream 9285 52402536 ~ 52402988 (-) True G1186563
TU1353203 lncRNA upstream 9819 52403070 ~ 52404921 (-) True G1186564
TU1353205 lncRNA upstream 14824 52408075 ~ 52408285 (-) True G1186566
TU1353206 lncRNA upstream 16379 52409630 ~ 52410408 (-) True G1186567
XM_036939765.1 mRNA downstream 57242 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA downstream 199115 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA downstream 199115 52186557 ~ 52189703 (-) True LOC110538721
XR_005035767.1 mRNA downstream 286861 52100885 ~ 52101957 (-) True LOC118938556
XM_036941454.1 mRNA downstream 781816 51592159 ~ 51607002 (-) True LOC110486749
XM_036941458.1 mRNA upstream 22068 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA upstream 22068 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA upstream 22068 52415319 ~ 52430034 (-) False LOC110486769
XM_036941461.1 mRNA upstream 22068 52415319 ~ 52430034 (-) True LOC110486769
XR_005035593.1 mRNA upstream 337127 52730378 ~ 52741276 (-) False LOC110486776
TU1352962 other downstream 358158 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 359844 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 377607 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 898577 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 1014864 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 266080 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1213773 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1413393 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2055632 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2072282 54465533 ~ 54470838 (-) True G1188127

Expression Profile