RNA id: TU1352439


Basic Information

Item Value
RNA id TU1352439
length 3415
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1185921
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52617694 ~ 52621551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGACTGTGTGTGCAGACTGCAAATGGACTGTGTGTGCAGACTGCAgatggactgtgtgtgtagactgcagatGGACTGTGTGTGCAGACTGCAGATGGACTGTGTGTGCAGACTGCAGATGGACTGTGTGTGCAGACTACAGATGGACTGTGTGTGCAGACTGCAgatggactgtgtgtgtagaCTACAGACAACAGATAATGAAGATAAATCCATGGCTCTCTAATCGTGCCGTTGACTTTGATCGGTGATCGTCTACCCCAACGCTGAATGGAACAGAAGGATACTGAGCTGTGACTGTAGTGTAGCAGAAaggaagggggaaagagagagatgggttgtaGCAGACACTGACTATATAGATGCTGCATAGAAGAAAAAAGCAAGAGGGATGGACACAGAAAGAGAGGGCAGGGGCTAGTGACAGGCTAGCTGTATGGAAAGAAAGGCAGCTATctgaagagaaagagacagaggagagaagtgaGAAGGATGACAAAAAGAAAGACTAACAGCAGAGCCGGAATGTATCGATGGAAAAGAAGCTATAGGAAGCTAAGAGACAATTTATTGTTGATCTGAAAATGTGGCCGGAGGCTCCATATGGAGGGTGTGACACAATGACAGAGTCTCCGGAGGaatgcagaggccaaattgagctctgtaCCGTATCGCCGTGTGCCTCTCAAATTTTTGTATGAATGCAGAGGGCTcagtatagctccacattgacatgattggttgacggtaggtgagggcaagaggtcctgtataaacacataCTCACTTCTTTggcaacttccttcacaacagctctgagCTGCTCGGCAAAGCGCAAGAAGTGcactgacttctgcagaggccatatCACCGTGAATGCTGCTCGGCCAATATAGACTGCGGATTGACCGTGCATCGCCTTTTAAGTGGCAGAAAAGAAGCTGGAGTGAGAACATGGTGGGACATTAATCGTTGTCAGTTTGCAGCCACATTACAAAAAGAAGAAAGTGGATTACTTTTCCATGGAATTTTTCTCCACCTCTTTCTAagctctttatctctctctaagCATTAGGACCTCTAACTGCTATAACAATGGACCAGAGAGGCAGGAGGACAGCAGCTTTATGGCTGAAAATGGGGTTTAATTTCACATTTTACATTTCACATATTTTGGATAAATCAGGGgttacagatataggatcttaatttgatcactcttttgttactGAGAATTTCAGATCAGCTTTGTGAtgtacataaattcactgaaaacccacggTAACACAtattatattaacagtattgtacttttcatgtagcctacttttggacAACTAAcagcctaaccaccgatcaaggAACGTTCTGGACTACATGTTCacatcctgttgctgcaggattattttgctgtgacaatataggtcaaattaagatcctgtatATCTTggtccaactcatttagaagctatTGAAACAGTATTAATGTTCACCCATAGTTTATTCCTTTGAATTATTGTCTAATGGAACTTTCAATGGATTCAAATAAATGGTATTTTATGAATGATAATTGACTGATATCGAAAAGTGAAATTTGAAAGCAGAAAATATAAAGCATTTGAAATACAGCACCATTTTGCTAGGTTATAGTCATACAACTCAGTTCACATGCAGTtgaaaatacttttttgacccgCTACATGAATATTTCAGTCACTCAGTTTCCACTTGTAGTTTAAGAGGCAATGTTTTCACGTACAGTTGTTACTGCACTTAAATGTGAAGTATGGATGATTGTGCTTGTTTGGGCTTCAAAGTATTTTACTCTGAGTTTAATATACGTTTagtgtgtacctctctctctcaatgtgagaaCAGTCCTATGGCTGGGGGCTGGGAGTGTATTGAGGGGATAAGAGGAAGCCTGGTTGGCAGCCAGCTTGCGGCCCTCCAGGCCTCTTGCTAGTCCACTTACTCCTTTTCTCAGGCTATACTCATCTGTTTATCTGCCTGAGAGACACAGTGTTCAGACCGTAGAGTGAAGTGACAGGTTGGCgagaaagagatgaagagaggagaggtaaagagagaggtggggagagagagccgAAGCAGTATGATTAAACAGGAGTGAGCCATGTCCTGAACAGCAGGTAATAACGGGAtcttcagagagggagagacggaaagAAGGATTTCCAGAAACAAGTACTCTCTAGAGGGGAGATGATCCCAGGGCCTCAGCATGAAGCTTCTAACACCTTTTATCAGGAATCTGTCAACAGACTGCTTACATGGACCAACAGgatactgaacacacacacacacacacacacacacacagagagagagagagagcgtgggaAGAGGACAGCGCTACAGAACCGAGGCTACTCAGAATCATTGGCACGCCTCTCTGGTATAGAACAGGTCTGAGAACAGATAGTAAAATCCTGCTCACATTCCCACTAGCTTTCTCCTATCTACTCCATCATAAttatcctcaaacaatagcaggCCTCATTTCAGCCTTATCTCAGCCTGGGCTCCATTGTTAACCATGACACTGGCTCCCCTGAGGTCCAACTGAGGATCTTTAGGTCATCAGCATAATGGCTGAAGTCACTGTTATTCTAGCCAGCCTAAAGAGTTAAATAGTTTTGTTATCATGATAGGGTTAATTCCAACATTAGTCCATGATGGGGAATAATCCATTTAATTTGTTCAAGGGTGTGCCATGGAGTACAGTACTACTACTTCATGAAATGTCCATTTTGCAAGGCAACAAACAACACTCTCTTTTCTTACATGTGTCCTTTAAACGAAAACCATCCATCTCACTCTGCCTTTCAGGCTGAATGTCTTCAGTACAAACTGAACAAATAGAGGTCTGTATCATCACTGAGCTTCAGCTGTTTGTGTCTGACACGTGTGGTTGCTAAGACGTCTGTAGTTGGACAACTTGTATAGGAGCAACAACCACACTAGCACTGTTTCTGCCTCCACAGTGCTATTCTGAGCTACAGTATAGCTCACATGGCTGTGTGGGAGTCTTTGTAGGCTGGGCGTCTTCATACTGAGAGTTGGGCTTTGTTCAGTTGGATAATTATGTTATCCTTTTGGAAGTAGCATTGCTTGTGGGATAAGGGGAACAGAGAATGAATATGGATTCGGTTTTGAATTTGGCAGTGTTCCTTGTTTGAAAGGGGATATTAAATGAAGCAAGATCGATAAGACCGATAACTCTGTTAAAAGTTCAGAAAGATCTTTCTTGGCAAAGTTTTGCGGATGCTTGATTAGTTTGTCTATCCTGCCGTGTGTCAAATAAAATACAGAAGTCCTTGGCAGGTGAGGGTCAGGAGTTCACACTAACTGTCTGAGCAACAATTATCACAACCTGGATTTGATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352437 lncRNA upstream 1470 52615478 ~ 52616224 (+) True LOC110486772
TU1352442 lncRNA upstream 2894 52612352 ~ 52614800 (+) False LOC110486772
TU1352443 lncRNA upstream 2894 52613762 ~ 52614800 (+) False LOC110486772
TU1352441 lncRNA upstream 3994 52612244 ~ 52613700 (+) False LOC110486772
TU1352446 lncRNA upstream 5536 52611180 ~ 52612158 (+) True LOC110486773
TU1352435 lncRNA downstream 574 52621682 ~ 52624208 (+) False G1185919
TU1352436 lncRNA downstream 1211 52622319 ~ 52624208 (+) True G1185919
TU1352539 lncRNA downstream 6263 52627371 ~ 52627914 (+) True G1186011
TU1352542 lncRNA downstream 15180 52636288 ~ 52636577 (+) True G1186014
TU1352550 lncRNA downstream 38477 52659585 ~ 52659878 (+) True G1186022
XR_002468113.2 mRNA upstream 1476 52612248 ~ 52616218 (+) False LOC110486772
XM_021558588.2 mRNA upstream 5525 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 172696 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 203118 52406177 ~ 52414576 (+) True LOC110485217
XM_036941457.1 mRNA upstream 227679 52374824 ~ 52390015 (+) False LOC110486767
LOC118938093 mRNA downstream 64755 52685863 ~ 52688094 (+) True LOC118938093
XM_036941464.1 mRNA downstream 84443 52705551 ~ 52731809 (+) False LOC110486774
XM_036941465.1 mRNA downstream 84443 52705551 ~ 52731809 (+) False LOC110486774
XM_036941466.1 mRNA downstream 84443 52705551 ~ 52731809 (+) False LOC110486774
XM_036941467.1 mRNA downstream 84443 52705551 ~ 52731809 (+) True LOC110486774
TU1352390 other upstream 228498 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 261753 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 441189 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 485667 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 548079 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 382944 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 825315 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 825315 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1567459 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1567459 54188567 ~ 54194138 (+) False G1187452

Expression Profile