RNA id: TU1352542


Basic Information

Item Value
RNA id TU1352542
length 290
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1186014
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52636288 ~ 52636577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaaagctgtgtgtgtgtaaagtagtGACGTTCgatgccgtttaagatgagggaggacgatatATTATTTTATGAGCATGACCTTGTTATTGTTACAGCAAATtgaatgactgtcattcataatcCATTCAACTCAATGTAACACCGATAGATTTAaggtactacatgatactctattTTTCCCTAAACCCATCATGATGTTGCTAAAACCTAGCCTAtgaagtttacaacgtaggtgcacagaaCGAGAGATATTTGAGTAATAGACATTGACACATTTAATaccactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352539 lncRNA upstream 8374 52627371 ~ 52627914 (+) True G1186011
TU1352435 lncRNA upstream 12080 52621682 ~ 52624208 (+) False G1185919
TU1352436 lncRNA upstream 12080 52622319 ~ 52624208 (+) True G1185919
TU1352440 lncRNA upstream 14737 52617763 ~ 52621551 (+) True G1185921
TU1352439 lncRNA upstream 15180 52617694 ~ 52621108 (+) False G1185921
TU1352550 lncRNA downstream 23008 52659585 ~ 52659878 (+) True G1186022
TU1353380 lncRNA downstream 123059 52759636 ~ 52759848 (+) True G1186719
TU1353387 lncRNA downstream 127086 52763663 ~ 52763909 (+) True G1186726
TU1353402 lncRNA downstream 141502 52778079 ~ 52778344 (+) True G1186741
TU1353408 lncRNA downstream 147548 52784125 ~ 52784343 (+) True G1186747
XR_002468113.2 mRNA upstream 20070 52612248 ~ 52616218 (+) False LOC110486772
XM_021558588.2 mRNA upstream 24119 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 191290 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 221712 52406177 ~ 52414576 (+) True LOC110485217
XM_036941456.1 mRNA upstream 246273 52374825 ~ 52390015 (+) False LOC110486767
LOC118938093 mRNA downstream 49286 52685863 ~ 52688094 (+) True LOC118938093
XM_036941464.1 mRNA downstream 68974 52705551 ~ 52731809 (+) False LOC110486774
XM_036941465.1 mRNA downstream 68974 52705551 ~ 52731809 (+) False LOC110486774
XM_036941466.1 mRNA downstream 68974 52705551 ~ 52731809 (+) False LOC110486774
XM_036941467.1 mRNA downstream 68974 52705551 ~ 52731809 (+) True LOC110486774
TU1352390 other upstream 247092 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 280347 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 459783 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 504261 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 566673 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 367475 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 809846 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 809846 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1551990 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1551990 54188567 ~ 54194138 (+) False G1187452

Expression Profile