RNA id: TU1353309


Basic Information

Item Value
RNA id TU1353309
length 224
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1186661
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52644374 ~ 52644597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctgactCATCTCTGACATTCTCTCTAatcctctaccatctctctctctctccctctcgctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacctgactcatctctgaccttctctctaatcctctaccatcccctctctctctcgctctcacacacccCTGACTCATCTCTGACCTTCTCTCTAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353306 lncRNA downstream 8785 52635287 ~ 52635589 (-) True G1186658
TU1353304 lncRNA downstream 12741 52631415 ~ 52631633 (-) True G1186656
TU1353300 lncRNA downstream 18737 52625362 ~ 52625637 (-) True G1186652
TU1353277 lncRNA downstream 32295 52611301 ~ 52612079 (-) True G1186635
TU1353284 lncRNA downstream 62286 52581131 ~ 52582088 (-) False G1186641
TU1353312 lncRNA upstream 4549 52649146 ~ 52649414 (-) True G1186664
TU1353317 lncRNA upstream 13418 52658015 ~ 52658290 (-) True G1186669
TU1353333 lncRNA upstream 34177 52678774 ~ 52753876 (-) False G1186675
TU1353328 lncRNA upstream 105054 52749651 ~ 52753876 (-) False G1186675
TU1353329 lncRNA upstream 105054 52749651 ~ 52753876 (-) True G1186675
XM_036941458.1 mRNA downstream 214340 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA downstream 214340 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA downstream 214340 52415319 ~ 52430034 (-) False LOC110486769
XM_036941461.1 mRNA downstream 214340 52415319 ~ 52430034 (-) True LOC110486769
XR_005035591.1 mRNA downstream 454671 52186557 ~ 52189703 (-) True LOC110538721
XR_005035593.1 mRNA upstream 85781 52730378 ~ 52741276 (-) False LOC110486776
XR_005035594.1 mRNA upstream 85781 52730378 ~ 52741276 (-) False LOC110486776
XR_005035595.1 mRNA upstream 85781 52730378 ~ 52741276 (-) False LOC110486776
XM_036941469.1 mRNA upstream 85781 52730378 ~ 52741513 (-) False LOC110486776
XM_036941468.1 mRNA upstream 85781 52730378 ~ 52741555 (-) True LOC110486776
TU1352962 other downstream 613714 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 615400 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 633163 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1154133 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 1270420 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 14734 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 962427 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1162047 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1804286 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1820936 54465533 ~ 54470838 (-) True G1188127

Expression Profile