RNA id: TU1353312


Basic Information

Item Value
RNA id TU1353312
length 269
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1186664
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52649146 ~ 52649414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTAAGTTAGTCACCCTTCCACTTACATTGCCCAATCTCCACCACTATTGTATTGACCTGGGATATGTAAACCAGAAACCCCCTGCTCTCTAGACTATTACCTGGCTATAGCGTTTCTTTACAGCAGCTATTACATGTTCCACTTTGAAGCCCTGTGGGTCTCTGTTGTCAAAGAGATGTCATGTCAATGGAATATAAAAACGTAGGGGCACTCAGCCTAAGACTgtggctgtcctaatatggacactgtgTTGATCAATAAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353309 lncRNA downstream 4549 52644374 ~ 52644597 (-) True G1186661
TU1353306 lncRNA downstream 13557 52635287 ~ 52635589 (-) True G1186658
TU1353304 lncRNA downstream 17513 52631415 ~ 52631633 (-) True G1186656
TU1353300 lncRNA downstream 23509 52625362 ~ 52625637 (-) True G1186652
TU1353277 lncRNA downstream 37067 52611301 ~ 52612079 (-) True G1186635
TU1353317 lncRNA upstream 8601 52658015 ~ 52658290 (-) True G1186669
TU1353333 lncRNA upstream 29360 52678774 ~ 52753876 (-) False G1186675
TU1353328 lncRNA upstream 100237 52749651 ~ 52753876 (-) False G1186675
TU1353329 lncRNA upstream 100237 52749651 ~ 52753876 (-) True G1186675
TU1353397 lncRNA upstream 122401 52771815 ~ 52772021 (-) True G1186736
XM_036941458.1 mRNA downstream 219112 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA downstream 219112 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA downstream 219112 52415319 ~ 52430034 (-) False LOC110486769
XM_036941461.1 mRNA downstream 219112 52415319 ~ 52430034 (-) True LOC110486769
XR_005035591.1 mRNA downstream 459443 52186557 ~ 52189703 (-) True LOC110538721
XR_005035593.1 mRNA upstream 80964 52730378 ~ 52741276 (-) False LOC110486776
XR_005035594.1 mRNA upstream 80964 52730378 ~ 52741276 (-) False LOC110486776
XR_005035595.1 mRNA upstream 80964 52730378 ~ 52741276 (-) False LOC110486776
XM_036941469.1 mRNA upstream 80964 52730378 ~ 52741513 (-) False LOC110486776
XM_036941468.1 mRNA upstream 80964 52730378 ~ 52741555 (-) True LOC110486776
TU1352962 other downstream 618486 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 620172 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 637935 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1158905 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 1275192 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 9917 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 957610 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1157230 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1799469 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1816119 54465533 ~ 54470838 (-) True G1188127

Expression Profile