RNA id: TU1352550


Basic Information

Item Value
RNA id TU1352550
length 294
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1186022
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52659585 ~ 52659878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaattgtgagtgagcccactcccttggctgagaagcaacaccacacatgaatggtctcaggatgctttactgttggcatgacacaggactgatggtagcgctcaccttgtcttctccggacaagcttttttccggatgccccaaacaatcggaaaggggattcatcagagaaaattactttaccccagtcctcagcagtccaatccctgtatcttttgcagaatatcagtctccCAGATGTTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352542 lncRNA upstream 23008 52636288 ~ 52636577 (+) True G1186014
TU1352539 lncRNA upstream 31671 52627371 ~ 52627914 (+) True G1186011
TU1352435 lncRNA upstream 35377 52621682 ~ 52624208 (+) False G1185919
TU1352436 lncRNA upstream 35377 52622319 ~ 52624208 (+) True G1185919
TU1352440 lncRNA upstream 38034 52617763 ~ 52621551 (+) True G1185921
TU1353380 lncRNA downstream 99758 52759636 ~ 52759848 (+) True G1186719
TU1353387 lncRNA downstream 103785 52763663 ~ 52763909 (+) True G1186726
TU1353402 lncRNA downstream 118201 52778079 ~ 52778344 (+) True G1186741
TU1353408 lncRNA downstream 124247 52784125 ~ 52784343 (+) True G1186747
TU1353410 lncRNA downstream 131066 52790944 ~ 52791411 (+) True G1186749
XR_002468113.2 mRNA upstream 43367 52612248 ~ 52616218 (+) False LOC110486772
XM_021558588.2 mRNA upstream 47416 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 214587 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 245009 52406177 ~ 52414576 (+) True LOC110485217
XM_036941456.1 mRNA upstream 269570 52374825 ~ 52390015 (+) False LOC110486767
LOC118938093 mRNA downstream 25985 52685863 ~ 52688094 (+) True LOC118938093
XM_036941464.1 mRNA downstream 45673 52705551 ~ 52731809 (+) False LOC110486774
XM_036941465.1 mRNA downstream 45673 52705551 ~ 52731809 (+) False LOC110486774
XM_036941466.1 mRNA downstream 45673 52705551 ~ 52731809 (+) False LOC110486774
XM_036941467.1 mRNA downstream 45673 52705551 ~ 52731809 (+) True LOC110486774
TU1352390 other upstream 270389 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 303644 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 483080 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 527558 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 589970 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 344174 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 786545 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 786545 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1528689 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1528689 54188567 ~ 54194138 (+) False G1187452

Expression Profile