RNA id: TCONS_00044810


Basic Information

Item Value
RNA id TCONS_00044810
length 731
lncRNA type intronic
GC content 0.37
exon number 5
gene id XLOC_021597
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18134466 ~ 18136294 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGTGTCAAACGCGGAGACgagaaaattcaaataaataatctattatctcttctaaataatctaaatGCTACATTATTGTTCAGCTGTGATCTGCCCAGAGAGACATGGAAAAGCACCAGGGAGCAGCTTTTCATATTCAGGTCTTCTTTATGATGGTGATGCTATTGAACCTCAGGCTTCTTTGACAGAAGATTAAGTAAAGGATCATAAATTCAGAAACATGCAAGCATGTGCTGGAAAAGAGAAATATGTGTGAGGCTTGTCTGCAGGAATAAAGTAAAGCATAAACCAGGTGCTTTTCTCCTTGTGTGGCTCCTGTTCTTACAATCAGTGTCCAGCAGCAACCAAAGCTCTCGAGGCCAAAGCGGTCTCATTACACACACTGGACACACAGTTAAACGGCCCCTCTGGGAGCACAGTCAGACCACTGCTAATGACAGCTAAAGAATCATTTGGCACCAACTATAACTCATTCAGTGATTTGACACAATGAACTCCTGAGGTGCCTAGttgatttaaaatttaaaagtttatttgCATTCTTATTTTTAGAAAGTCAAACATTACAGCAATGGACAAAACACTTGAATAATCTCACTTGATTTGttggtttgagtaaaatgttaatataggtTTCATTTTGTAATAGTCTTATAACATTTCTTCCCAATTTCTAATTGTTTCAGCATTTCATTCTGAAaattatgttttcatttgttgaGATTAAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042866 lncRNA upstream 2436 18129860 ~ 18132323 (+) True XLOC_021595
TCONS_00042860 lncRNA upstream 202253 17930109 ~ 17932506 (+) True XLOC_021591
TCONS_00042847 lncRNA upstream 291999 17839340 ~ 17842760 (+) True XLOC_021586
TCONS_00042842 lncRNA upstream 351715 17782508 ~ 17783044 (+) True XLOC_021583
TCONS_00044808 lncRNA upstream 358414 17770424 ~ 17776345 (+) True XLOC_021582
TCONS_00042874 lncRNA downstream 552060 18688354 ~ 18691482 (+) False XLOC_021600
TCONS_00042876 lncRNA downstream 552431 18688725 ~ 18691482 (+) True XLOC_021600
TCONS_00044811 lncRNA downstream 788176 18924470 ~ 18929002 (+) True XLOC_021604
TCONS_00042882 lncRNA downstream 915191 19051485 ~ 19066987 (+) True XLOC_021606
TCONS_00042883 lncRNA downstream 969252 19105546 ~ 19119441 (+) False XLOC_021607
TCONS_00042865 mRNA upstream 19869 18103080 ~ 18114890 (+) True XLOC_021594
TCONS_00042863 mRNA upstream 141096 17981127 ~ 17993663 (+) False XLOC_021593
TCONS_00042862 mRNA upstream 141310 17980875 ~ 17993449 (+) False XLOC_021593
TCONS_00042864 mRNA upstream 148560 17981250 ~ 17986199 (+) True XLOC_021593
TCONS_00042861 mRNA upstream 186634 17939611 ~ 17948125 (+) True XLOC_021592
TCONS_00042868 mRNA downstream 2295 18138589 ~ 18145193 (+) True XLOC_021596
TCONS_00042871 mRNA downstream 390734 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042870 mRNA downstream 390734 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042872 mRNA downstream 390914 18527208 ~ 18543358 (+) False XLOC_021599
TCONS_00042873 mRNA downstream 390941 18527235 ~ 18543359 (+) True XLOC_021599
TCONS_00042854 other upstream 260612 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042853 other upstream 261161 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042843 other upstream 351218 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042836 other upstream 633331 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042829 other upstream 922953 17187884 ~ 17211806 (+) True XLOC_021571
TCONS_00042869 other downstream 152780 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042875 other downstream 552063 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042879 other downstream 595028 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042887 other downstream 1041597 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042896 other downstream 1081234 19217528 ~ 19218940 (+) True XLOC_021613