RNA id: TU1353402


Basic Information

Item Value
RNA id TU1353402
length 266
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1186741
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52778079 ~ 52778344 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATACTTCAAGTGTACGACGACAACTGGAGGAGACTCGATGTGAAGCCCAAATCCATGCGCTTCCATGTACAATGTGACAATTCGATAACTGTTTTCCTACTATTGGAATATACGCCATTGAAAACGTTTTGGATGTTTTTAGGGAAGCACTCACCATTTTTCTGAGACAAGGCAGAAAGAGGGAATGTATTTAATTTGAACTGAAAGAAATATTCGGACTCATATGATTATTTCTAGAAGTCCTTCTCGTGGATCTACAATGCGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353387 lncRNA upstream 14170 52763663 ~ 52763909 (+) True G1186726
TU1353380 lncRNA upstream 18231 52759636 ~ 52759848 (+) True G1186719
TU1352550 lncRNA upstream 118201 52659585 ~ 52659878 (+) True G1186022
TU1352542 lncRNA upstream 141502 52636288 ~ 52636577 (+) True G1186014
TU1352539 lncRNA upstream 150165 52627371 ~ 52627914 (+) True G1186011
TU1353408 lncRNA downstream 5781 52784125 ~ 52784343 (+) True G1186747
TU1353410 lncRNA downstream 12600 52790944 ~ 52791411 (+) True G1186749
TU1353434 lncRNA downstream 52291 52830635 ~ 52832136 (+) True G1186767
TU1353458 lncRNA downstream 133840 52912184 ~ 52912668 (+) False G1186789
TU1353460 lncRNA downstream 133840 52912184 ~ 52912668 (+) True G1186789
NM_001160662.1 mRNA upstream 24162 52749848 ~ 52753917 (+) True leg
XM_036941464.1 mRNA upstream 46270 52705551 ~ 52731809 (+) False LOC110486774
XM_036941471.1 mRNA downstream 129552 52907896 ~ 53046938 (+) False LOC110539012
XM_036941470.1 mRNA downstream 129554 52907898 ~ 53046938 (+) False LOC110539012
XM_036941476.1 mRNA downstream 337928 53116272 ~ 53122404 (+) True LOC110486782
XM_036941477.1 mRNA downstream 355206 53133550 ~ 53138298 (+) True LOC110518612
XR_005035596.1 mRNA downstream 449796 53228140 ~ 53228911 (+) False LOC118938324
TU1352390 other upstream 388883 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 422138 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 601574 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 646052 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 708464 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 225708 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 668079 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 668079 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1410223 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1410223 54188567 ~ 54194138 (+) False G1187452

Expression Profile