RNA id: TU1353458


Basic Information

Item Value
RNA id TU1353458
length 237
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1186789
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52912184 ~ 52912668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctgccaataacagctatttTCAATGTTTCCCtccccactcccagacagtccaacaaacctctctgccaataacagctattttcagtgTTTCCCTCCCCACTCTCAGACAGTCcaacaaacctctctgccaataacagctattttcagtgtttccctccccactcccagacagtccaacaaacctctctgccaataacagctattttcagtgTTTCCCTCCCCACTCTCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353434 lncRNA upstream 80048 52830635 ~ 52832136 (+) True G1186767
TU1353410 lncRNA upstream 120773 52790944 ~ 52791411 (+) True G1186749
TU1353408 lncRNA upstream 127841 52784125 ~ 52784343 (+) True G1186747
TU1353402 lncRNA upstream 133840 52778079 ~ 52778344 (+) True G1186741
TU1353387 lncRNA upstream 148275 52763663 ~ 52763909 (+) True G1186726
TU1353473 lncRNA downstream 20267 52932935 ~ 52933317 (+) True G1186801
TU1353478 lncRNA downstream 25148 52937816 ~ 52938080 (+) True G1186806
TU1353569 lncRNA downstream 72545 52985213 ~ 52985433 (+) True G1186889
TU1353572 lncRNA downstream 87687 53000355 ~ 53000558 (+) True G1186892
TU1353573 lncRNA downstream 88032 53000700 ~ 53000931 (+) True G1186893
NM_001160662.1 mRNA upstream 158267 52749848 ~ 52753917 (+) True leg
XM_036941464.1 mRNA upstream 180375 52705551 ~ 52731809 (+) False LOC110486774
XM_036941476.1 mRNA downstream 203604 53116272 ~ 53122404 (+) True LOC110486782
XM_036941477.1 mRNA downstream 220882 53133550 ~ 53138298 (+) True LOC110518612
XR_005035596.1 mRNA downstream 315472 53228140 ~ 53228911 (+) False LOC118938324
XR_005035597.1 mRNA downstream 315472 53228140 ~ 53245488 (+) True LOC118938324
XM_036941493.1 mRNA downstream 532667 53445335 ~ 53447012 (+) False LOC110538743
TU1352390 other upstream 522988 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 556243 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 735679 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 780157 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 842569 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 91384 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 533755 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 533755 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1275899 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1275899 54188567 ~ 54194138 (+) False G1187452

Expression Profile