RNA id: TU1353531


Basic Information

Item Value
RNA id TU1353531
length 447
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1186856
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52922665 ~ 52924164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttatatctttgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatgaacagTCATATCTAGCTCCTCATTTCCATATTATCGTAAACAGTAGCTGGATATTGCCACAGATCAACATTTCCATATTATCATAAACAGTAGCTGGATATTGCCACAGATCAACATTTCCATGTAATTAAACAGTAGCTGCATATTGCCACAGATCAACATTTCCATATTATCATAAACAGTAGCTGGATATTGCCACAGATCAACATTTCCATGTAATTAAACAGTAGCTGCATATTGCCACAGATCAACATTTCCATGTAATTAAACAGTAGCTGGATATTGCCACAGATCAACATTTCCATATAATTAAACAGTAGCTGCATATTGCCACAGATCAACATTTCCATGTAATTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353499 lncRNA downstream 55805 52793600 ~ 52866860 (-) True G1186826
TU1353493 lncRNA downstream 145643 52776747 ~ 52777022 (-) True G1186820
TU1353397 lncRNA downstream 150644 52771815 ~ 52772021 (-) True G1186736
TU1353333 lncRNA downstream 168789 52678774 ~ 52753876 (-) False G1186675
TU1353656 lncRNA upstream 51885 52976049 ~ 52976614 (-) True G1186957
TU1353657 lncRNA upstream 52561 52976725 ~ 52977498 (-) True G1186958
TU1353658 lncRNA upstream 54825 52978989 ~ 52979219 (-) True G1186959
TU1353660 lncRNA upstream 57445 52981609 ~ 52982244 (-) True G1186961
TU1353661 lncRNA upstream 58920 52983084 ~ 52983640 (-) True G1186962
XM_036941468.1 mRNA downstream 181110 52730378 ~ 52741555 (-) True LOC110486776
XM_036941469.1 mRNA downstream 181152 52730378 ~ 52741513 (-) False LOC110486776
XR_005035593.1 mRNA downstream 181389 52730378 ~ 52741276 (-) False LOC110486776
XM_036941473.1 mRNA upstream 169502 53093666 ~ 53107917 (-) False LOC110485222
XM_036941475.1 mRNA upstream 169502 53093666 ~ 53107917 (-) False LOC110485222
XM_036941472.1 mRNA upstream 169502 53093666 ~ 53107919 (-) False LOC110485222
XM_036941474.1 mRNA upstream 169502 53093666 ~ 53107919 (-) True LOC110485222
XM_036941478.1 mRNA upstream 322230 53246394 ~ 53250376 (-) True LOC110538731
TU1353318 other downstream 262856 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 892005 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 893691 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 911454 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1432424 51489777 ~ 51490241 (-) True G1186154
TU1354707 other upstream 682860 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 882480 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1524719 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1541369 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 1675237 54599401 ~ 54600449 (-) True G1188186

Expression Profile