RNA id: TU1353906


Basic Information

Item Value
RNA id TU1353906
length 269
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1187167
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53420774 ~ 53421042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaAAATACTGACTTCCAAATGACTTTTGAGATAtcctaaatagtatttgaacacaGGTCTGACACTAAAATTTGCACTCTCACCCATATCAGCGGCTCCTACTCCGATGTTCCTCATCTTCTGGATGACACCAATCAAGACAGCCATTTTATCAGCTGGTATGACACTGACCAGACAATGAAGTCTGTCCTCCGAACTGTGGGTATTTATGTAGCCAGGATCCTCTTCTGATAATGCTGATATGGGATTAAACTAGTCAAGAgtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353901 lncRNA upstream 7673 53411591 ~ 53413101 (+) True G1187163
TU1353886 lncRNA upstream 23743 53391858 ~ 53397031 (+) True G1187151
TU1353832 lncRNA upstream 135426 53285113 ~ 53285348 (+) True G1187101
TU1353831 lncRNA upstream 136976 53283422 ~ 53283798 (+) True G1187100
TU1353830 lncRNA upstream 137581 53282895 ~ 53283193 (+) True G1187099
TU1353912 lncRNA downstream 6376 53427418 ~ 53428040 (+) True G1187173
TU1353936 lncRNA downstream 21522 53442564 ~ 53442820 (+) True G1187192
TU1354009 lncRNA downstream 220858 53641900 ~ 53653613 (+) True G1187245
TU1354017 lncRNA downstream 247374 53668416 ~ 53669862 (+) True G1187253
TU1354024 lncRNA downstream 255467 53676509 ~ 53766636 (+) False G1187259
XR_005035597.1 mRNA upstream 175286 53228140 ~ 53245488 (+) True LOC118938324
XR_005035596.1 mRNA upstream 191863 53228140 ~ 53228911 (+) False LOC118938324
XM_036941477.1 mRNA upstream 282476 53133550 ~ 53138298 (+) True LOC110518612
XM_036941476.1 mRNA upstream 298370 53116272 ~ 53122404 (+) True LOC110486782
XM_036941470.1 mRNA upstream 373836 52907898 ~ 53046938 (+) False LOC110539012
XM_036941493.1 mRNA downstream 24293 53445335 ~ 53447012 (+) False LOC110538743
XM_036941494.1 mRNA downstream 24293 53445335 ~ 53447012 (+) False LOC110538743
XM_036941495.1 mRNA downstream 24293 53445335 ~ 53447012 (+) False LOC110538743
XM_036941492.1 mRNA downstream 24295 53445337 ~ 53447012 (+) False LOC110538743
XM_036941498.1 mRNA downstream 24304 53445346 ~ 53449108 (+) False LOC110538743
TU1353565 other upstream 397793 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1031578 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1064833 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 1244269 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 1288747 52121577 ~ 52132027 (+) True LOC110486764
TU1353929 other downstream 25381 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 25381 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 767525 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 767525 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 843024 54264066 ~ 54265028 (+) True G1187390

Expression Profile