RNA id: TU1354009


Basic Information

Item Value
RNA id TU1354009
length 1878
lncRNA type antisense_over
GC content 0.50
exon number 12
gene id G1187245
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53641900 ~ 53653613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgggatcttttattttagctcatgaaacatgttgcgtttatatttttgatatAAACAATACCCCCACAATTTTCCCCTCATTCTAACATACTTGGCTGCTACACTAGATGCAACATTTTTGCTGATGTAGCAGCGCCAACAGATTTTCAAGGCTCTTAGTCTCCCCCTGCAGCAGCTGGGCGGAATAACAAAGATATCATTACTCACATTCATCTTGGTGATCAAATCAGACTGCCATTACTGTAGATAGGCCATTTAATGAATTTACATCAAATATACAGAGAAATTGACAACAAAAAGCATAATTATTCCTGATACCTGTGTACAATTATTGTAGAACAAACTTTAACATGATTTGTTAACAAAAGATTATCGTTTACTGTGAGATGAAGTCATGGGCTTCATATCAGAACCAGGTTCCTTTTTCTGGAGTAAGCAGCCAGGCACAACCTGCCCAGGTTAAAATGTTAAATAACtgtttcattgtttatggtttattTATTTTCACAATTCATCCACGAAGGGTGTGTTGGCGAGGTGTCCGCTAGCTGCCATCGATTTCTTGCCGTCCACAAACTTTCTCGCAGCGTTGACAACGTCTGCGTGGCTGACAGAGTCGATGCTCTGGGTAACTGTCTCTGGTGAGTGGTAGGCTCCGCTGGACAGAGCCTGGGCCCCCATCTCCTCCAGCAGGCCCTCGGAACTCTCCATGGACATCAGGTACTCGGCTTTCAACTGCTTCTTTGCTCTGGTGACATCGTCCTCGGACACGCCTCCCTTCGCAACCCCTGTCACCTGGGCGATGGCAGCTTTGATCACCTCTCCTGCGGAGTCGGCTTGGGCGATGGAGTAGACTCCAAAGAGTCCAGAGTCAGCGTATGTGGCATTGAAGGCTGTGGCATCGAAGGGCTGTGTGGTTGCATTGGCGATGCCCTGGCTCAGTTTGCTGGTGACGTTGGAGCCTCTCTTTACGTGTGGCCCGGCTCCCAGAACCCTTTGCAGCACACTAAAGGCATTGGCCTCTGCTGATCCAGTCACACCGCCCTCGCTGGCGATCAGCGAGTGGACCAGACCGGCCCCGTTCTGCACCCGCAGCTCACCTCCGCGGTATACAGCCTTGGCCCCAGCAACTCCAGCCCCACTGCGGACACTGAGAAACTGCTCTCCTACCTGCCTCAGCACTGAGTGATTCACACCTAGTCCTACAAGAGCCATTCTGGCACTGGTGAAATTGTTCTGGACAAAGGACTGCAGCTGTTCACCACTGACTTTGCCAACCATGTAGTCAGGACAGTACAGGGAGTTGGATAGAGCGTTTTTGTAAGCAGCTTCATGCAACTTCTCAATGACACCTATCTGTGAACACTGGTGGGCCAGGGCCCGGTCTACCTTGACCCTGGAGGTCAGGTCGTCCACCTCCCATGGCCGGAACTCTGGGGTCATGGTCACGTTGATCAGGTACTCAATCACTGTGTCTAAGTGGTCTCTCAAACACTCCACAGAGTAAACCATGGTCTCCCTCGATGACGTTACGCTCAGACTACCCCCCACTGCCTCCACACCACGACAGATCCTGAACGCAGACGCTCCCTTAGTAGTCAGATTGGCTGCCAACCGCAGGACATGACTGACTCCCTGGTTCTCCACAGTCTCATAACGAGTGCCTGCTttaacaaacacacccacactggACACGGGAGAGTAGTTCTCCAATGACGCAATCACTAGACCGTTGGGCAGCTTGGACACCTAATAGAGAATACAGGGAGGGAGAGTCATGATGTCACAGCTGGAACACACGTGAGACTGGCAGCATTGTTGTTTTGGAAACTGCAGAGTGAGTAAGAGAGTAAACATTCCATTCTGTTCAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353936 lncRNA upstream 199080 53442564 ~ 53442820 (+) True G1187192
TU1353912 lncRNA upstream 213860 53427418 ~ 53428040 (+) True G1187173
TU1353906 lncRNA upstream 220858 53420774 ~ 53421042 (+) True G1187167
TU1353901 lncRNA upstream 228799 53411591 ~ 53413101 (+) True G1187163
TU1353886 lncRNA upstream 244869 53391858 ~ 53397031 (+) True G1187151
TU1354017 lncRNA downstream 14803 53668416 ~ 53669862 (+) True G1187253
TU1354024 lncRNA downstream 22896 53676509 ~ 53766636 (+) False G1187259
TU1354025 lncRNA downstream 22896 53676509 ~ 53766212 (+) True G1187259
TU1354008 lncRNA downstream 59511 53713124 ~ 53716000 (+) True G1187244
TU1354037 lncRNA downstream 62693 53716306 ~ 53720111 (+) True G1187271
XR_005035599.1 mRNA upstream 7735 53626034 ~ 53634165 (+) False LOC110538749
XM_021625714.2 mRNA upstream 7735 53630479 ~ 53634165 (+) True LOC110538749
trnal-uag-2 mRNA upstream 96336 53545483 ~ 53545564 (+) True trnal-uag-2
XM_036941489.1 mRNA upstream 163616 53464210 ~ 53478284 (+) True cdr2a
XM_036941491.1 mRNA upstream 183279 53456336 ~ 53458621 (+) False LOC110538736
XM_036939766.1 mRNA downstream 5157 53658770 ~ 53662221 (+) True LOC110515633
XM_021558611.2 mRNA downstream 36847 53690460 ~ 53694370 (+) True LOC110486792
XM_036941510.1 mRNA downstream 53710 53707323 ~ 53712693 (+) False LOC110486793
XM_036941509.1 mRNA downstream 54199 53707812 ~ 53712693 (+) False LOC110486793
XM_036941507.1 mRNA downstream 54573 53708186 ~ 53712693 (+) False LOC110486793
TU1353929 other upstream 191436 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 192184 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 618919 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1252704 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1285959 52274330 ~ 52355941 (+) True G1185855
TU1354243 other downstream 534954 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 534954 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 610453 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 637972 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1340061 54993674 ~ 54997295 (+) False G1188344

Expression Profile