RNA id: TU1354802


Basic Information

Item Value
RNA id TU1354802
length 466
lncRNA type intronic
GC content 0.57
exon number 1
gene id G1187930
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53877526 ~ 53877991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacccactcccatcccctccctacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactatttctcaacccactcccataccctccctacctctcaactcactcccatGCCCTTACTActtctcaacccactcccatcccctcacaacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcctatcccctcactacctctcaacccactcccatcccctcactacctctcaacccactcccaccccctcactacctctcaacccactcctatcccttcactacctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354765 lncRNA downstream 84661 53792307 ~ 53792865 (-) True G1187895
TU1354763 lncRNA downstream 91073 53785267 ~ 53786453 (-) True G1187893
TU1354633 lncRNA downstream 180267 53693228 ~ 53697259 (-) True G1187779
TU1354683 lncRNA downstream 328210 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 330029 53547287 ~ 53547497 (-) True G1187823
TU1354803 lncRNA upstream 867 53878858 ~ 53879075 (-) True G1187931
TU1354822 lncRNA upstream 59469 53937460 ~ 53938325 (-) True G1187950
TU1354844 lncRNA upstream 109241 53987232 ~ 53987767 (-) True G1187972
TU1354847 lncRNA upstream 129387 54007378 ~ 54007651 (-) True G1187975
TU1354859 lncRNA upstream 147484 54025475 ~ 54031209 (-) False G1187986
XM_036941513.1 mRNA downstream 74174 53793576 ~ 53803352 (-) True cacng5b
XM_021558620.2 mRNA downstream 152257 53713123 ~ 53725269 (-) True LOC110486794
XM_021558619.2 mRNA downstream 152260 53713123 ~ 53725266 (-) False LOC110486794
XM_021558610.2 mRNA downstream 169256 53699239 ~ 53708270 (-) True LOC110486791
XM_021558608.2 mRNA downstream 187322 53680096 ~ 53690204 (-) True LOC110486790
XR_005035819.1 mRNA upstream 548272 54426263 ~ 54426404 (-) True LOC118938612
XR_005035602.1 mRNA upstream 548445 54426436 ~ 54427449 (-) False LOC110538769
XR_002475811.2 mRNA upstream 548445 54426436 ~ 54427451 (-) False LOC110538769
XM_036941540.1 mRNA upstream 858723 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 863488 54741479 ~ 54748709 (-) False LOC110486825
TU1354775 other downstream 66769 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 239713 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1217717 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1846866 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1848552 51924963 ~ 52028974 (-) False G1186381
TU1355055 other upstream 570892 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 587542 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 721410 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 866434 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 945921 54823912 ~ 54831322 (-) False LOC110485228

Expression Profile