RNA id: TU1354847


Basic Information

Item Value
RNA id TU1354847
length 242
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1187975
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54007378 ~ 54007651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggatagagagaataggatagagagagagagagggatagagagaataggatagagagagagagggggatagagagaataggatagagagagagaggggatagagagaataggatagagagagagagggggatagagagaataagatagagagagaggggggtagagagaataggatagagagagagaggggggtagagagaataggatagagagagagaggggatagagagaataggatagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354844 lncRNA downstream 19611 53987232 ~ 53987767 (-) True G1187972
TU1354822 lncRNA downstream 69053 53937460 ~ 53938325 (-) True G1187950
TU1354803 lncRNA downstream 128303 53878858 ~ 53879075 (-) True G1187931
TU1354802 lncRNA downstream 129387 53877526 ~ 53877991 (-) True G1187930
TU1354765 lncRNA downstream 214513 53792307 ~ 53792865 (-) True G1187895
TU1354859 lncRNA upstream 17824 54025475 ~ 54031209 (-) False G1187986
TU1354862 lncRNA upstream 17824 54025475 ~ 54028995 (-) False G1187986
TU1354863 lncRNA upstream 17824 54025475 ~ 54033092 (-) True G1187986
TU1354889 lncRNA upstream 94077 54101728 ~ 54102534 (-) False G1188011
TU1354891 lncRNA upstream 94077 54101728 ~ 54102534 (-) True G1188011
XM_036941513.1 mRNA downstream 204026 53793576 ~ 53803352 (-) True cacng5b
XM_021558620.2 mRNA downstream 282109 53713123 ~ 53725269 (-) True LOC110486794
XM_021558619.2 mRNA downstream 282112 53713123 ~ 53725266 (-) False LOC110486794
XM_021558610.2 mRNA downstream 299108 53699239 ~ 53708270 (-) True LOC110486791
XM_021558608.2 mRNA downstream 317174 53680096 ~ 53690204 (-) True LOC110486790
XR_005035819.1 mRNA upstream 418612 54426263 ~ 54426404 (-) True LOC118938612
XR_005035602.1 mRNA upstream 418785 54426436 ~ 54427449 (-) False LOC110538769
XR_002475811.2 mRNA upstream 418785 54426436 ~ 54427451 (-) False LOC110538769
XM_036941540.1 mRNA upstream 729063 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 733828 54741479 ~ 54748709 (-) False LOC110486825
TU1354775 other downstream 196621 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 369565 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1347569 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1976718 52025918 ~ 52030660 (-) True G1186381
TU1352758 other downstream 1996167 52010690 ~ 52011211 (-) True G1186216
TU1355055 other upstream 441232 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 457882 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 591750 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 736774 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 816261 54823912 ~ 54831322 (-) False LOC110485228

Expression Profile