RNA id: TCONS_00042875


Basic Information

Item Value
RNA id TCONS_00042875
length 1529
RNA type processed_transcript
GC content 0.39
exon number 4
gene id XLOC_021600
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18688354 ~ 18691482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagtTGTGTTTTGAAagttgaaataatgttgatagaacgtttaatgttgaatggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatatGTCAGTTGTTGCTTTCATGTTGAAACAATGTTAaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttatcatgatctgtatgttgaattaacgtcatggcttcacccaacattcaacatgtttggttaccatggtatTGGAGGACTCCGCGCACGCGGCCACGCGCagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgaggggcatcaagaacacgcagatagcctaaacctgtgtcagcctggacagactgcagttctgctactccacaccaaggcttttgtatggatgtcttgactgctactgtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacCGTGTTCTCTAAAGGTgtaactggagcaaaacaacagcacccgttacagtgaaatttgcaTTCATAAAAGATAGTGATATATCAGGTATAgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatatgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagtggaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgactatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaacatattttagtttgtgttctgaagattaacaagtatctgggatgacacaagtaattaataacagaacctatatgaacagttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtctttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttaaacaaaaaaaaaaaaaacaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000133001

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044809 lncRNA upstream 552063 18134562 ~ 18136294 (+) False XLOC_021597
TCONS_00044810 lncRNA upstream 552063 18134759 ~ 18136294 (+) False XLOC_021597
TCONS_00044670 lncRNA upstream 552189 18135571 ~ 18136168 (+) True XLOC_021597
TCONS_00044669 lncRNA upstream 552860 18134466 ~ 18135497 (+) False XLOC_021597
TCONS_00042866 lncRNA upstream 556034 18129860 ~ 18132323 (+) True XLOC_021595
TCONS_00044811 lncRNA downstream 232988 18924470 ~ 18929002 (+) True XLOC_021604
TCONS_00042882 lncRNA downstream 360003 19051485 ~ 19066987 (+) True XLOC_021606
TCONS_00042883 lncRNA downstream 414064 19105546 ~ 19119441 (+) False XLOC_021607
TCONS_00042886 lncRNA downstream 486409 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042889 lncRNA downstream 486409 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042873 mRNA upstream 144998 18527235 ~ 18543359 (+) True XLOC_021599
TCONS_00042871 mRNA upstream 144999 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042870 mRNA upstream 144999 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042872 mRNA upstream 144999 18527208 ~ 18543358 (+) False XLOC_021599
TCONS_00042867 mRNA upstream 543124 18134313 ~ 18145233 (+) False XLOC_021596
TCONS_00042877 mRNA downstream 31233 18722715 ~ 18757078 (+) False XLOC_021601
TCONS_00042878 mRNA downstream 31433 18722915 ~ 18754439 (+) True XLOC_021601
TCONS_00042880 mRNA downstream 87561 18779043 ~ 18794561 (+) True XLOC_021603
TCONS_00042881 mRNA downstream 252906 18944388 ~ 18951148 (+) True XLOC_021605
TCONS_00042884 mRNA downstream 414666 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042869 other upstream 399156 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042854 other upstream 814210 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042853 other upstream 814759 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042843 other upstream 904816 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042836 other upstream 1186929 17501314 ~ 17501428 (+) True XLOC_021579
TCONS_00042879 other downstream 39840 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042887 other downstream 486409 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042896 other downstream 526046 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042898 other downstream 868592 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 1103956 19795438 ~ 19799039 (+) False XLOC_021623

Expression Profile

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